Rubrivivax gelatinosus: RGE_43250
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Entry
RGE_43250 CDS
T01803
Symbol
uvrA
Name
(GenBank) UvrABC system protein A
KO
K03701
excinuclease ABC subunit A
Organism
rge
Rubrivivax gelatinosus
Pathway
rge03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
rge00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
RGE_43250 (uvrA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rge03400
]
RGE_43250 (uvrA)
DNA repair and recombination proteins [BR:
rge03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
RGE_43250 (uvrA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
RGE_43250 (uvrA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
UvrA_inter
AAA_29
SMC_N
AAA_21
nSTAND1
AAA_16
RsgA_GTPase
AAA_22
AAA_23
AAA_25
Viral_helicase1
NACHT
AAA_18
nSTAND3
UvrA_DNA-bind
AAA_33
DnaJ_CXXCXGXG
DUF4350
RNA12
Motif
Other DBs
NCBI-ProteinID:
BAL97661
UniProt:
I0HXC4
LinkDB
All DBs
Position
complement(4622535..4628222)
Genome browser
AA seq
1895 aa
AA seq
DB search
MSSGSIRIRGARQHNLKNLDLDIHTGELTVVTGPSGSGKSSLVFDTLYAEGQRRYVETFS
AYARQFLDRMDRPAVDRVDGVPPAIAIDQTNPVRTSRSTVGTMTELNDHLKLLYARAAQL
FDRQTALPVRHDTPETIHDDLAARAAAAGDPRLVFSFPVELPADTTPEQQEQWLSAAGFT
RVQSERVVEGRKILDVVADRLRFAGAERARVMEAIELALKRGGGRLTVHVGDDGTTWKYS
TGLHCPESDIRYAEPQPAMFSFNSAYGACDTCRGFGRVIGVDFGLVIPDERKTLRNGAIK
PLQTPAWAECQDDLIKYAGEAGIPRDTAWNQLTKAQRDWVIEGSPNWTGNWNKQWYGIRR
FFGYLESKAYKMHIRVLLSKYRSYTPCTACGGARLKLEPLLWRLGTKADADAVLPPSQRY
LPVGVAWTREQLQALPGLGLHDLMQLSIERLRRFFDGLTLPGTMLDEALKLLLDEVRTRL
KYLNDVGLGYLTLDRQSRTLSGGEVQRINLTTALGTSLVNTMFVLDEPSIGLHPRDMGRI
VTAMHRLRDAGNTLVVVEHDPAVMLAADRLIDMGPGPGERGGRIVFDGTPDTAREADTLT
GAYLGGRRQVGMGIRRAVAASTPRLLLEGAREHNLKNVSVELPLQRLVVVTGVSGSGKST
LIQDVLYPALARHFGKPTETPGAHDRLLGTDWLADAVFVDQSPIGKTARSNPASYVGAFD
ELRKLFADAPLARERGYTAGTFSFNAGDGRCPTCGGSGFEHVEMQFLSDVYLRCPDCDGR
RYRAEILDVKLVRGPMQLSIADVLDLTVAEAAHWFQQDREVVQRLQPIVDVGLDYVRLGQ
PVPTLSGGEAQRLKLAGFLAEAAAGPRQPAARRGTLFLFDEPTTGLHFDDIAKLMRALRK
LLEAGHSLLVIEHNLDVIRAADWIVDLGPEGGEAGGELVCAGTPEDLKAHLASHTGVALR
EYEAALGLGVARAAERSAEGADGLPLQTLVRARRRERQAEDDTIRIVNAKEHNLKNLSVQ
IPRGKFNVVTGVSGSGKSTLAFDILFNEGQRRYLESLNAYARSIVQPAGRPEVDAVWGIP
PTVAIEQRLSRGGRKSTVATTTELWHFLRLLWVKLGLQHCVKDGAPVRAQSTESIAAQLL
RDHRGQHVGLLAPLVVNRKGVYTDLAKWASARGHTHLRVDGEFVPVSPFPRLDRFKEHTI
ELPVGSLVVDPAGEAELRSLLSKALELGKGVLHLLHPLDGLAEAMDGGGNGRGLGELKVF
STKRACPVCGTSYPELDPRMFSYNSKHGWCTHCVGTGLALTREQRKAFDDSVRDEDNKGR
EQSFPSEEPELEGLADQPCPECHGARLNPAALAVTFDDESIGAIARLSVRETRAWVEQLE
LTGRDAEIARDIVAEIRSRLQFLEDVGLGYLTLDRAAPTLSGGEAQRIRLAAQLGSNLQG
VCYVLDEPTIGLHPRDNRILLDALHKLGDQGNTLVVVEHDEDTIRRAEHIIDIGPSAGVR
GGRLVAQGSVADLSAAPESLTGRFLAAPPKHPLQARRPVEADAPALRLTGASLHNLKSVD
VTVPLKRLVAVTGVSGSGKSTLARDVLLASVQAAVTQKSTRAGRDAIVANGFHGLVGCSG
LTGFEPIDRVLEVDQTPIGKTPRSCPATYIGFWDAIRKLFAETLEAKARGYAANRFSFNT
GDGRCPACEGQGMRTIEMSFLPDVKVPCDTCHGARFNPETLAVTWRGKSIGDVLRMEVDE
AVGFFASMPAIAHPLQLLKDVGLGYLTLGQPSPTLSGGEAQRIKLVTELSKVRDDVTRRG
NRLPHTLYVLDEPTVGLHMADVERLARVLHRLVDAGHSVVVIEHDLDVIAEADWILDLGP
EGGGEGGRVVAAGTPEQVVAAGTHTGRALAPVLAR
NT seq
5688 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtccggctccatccgcatccgcggcgcccgccagcacaacctcaagaacctcgac
ctggacatccacaccggcgagttgacggtggtgaccggccccagcggctcgggcaagtcc
agcctggtcttcgacacgctgtatgccgaaggccagcggcgctacgtcgagaccttcagc
gcctacgcgcgccagttcctggaccgcatggaccgcccggcggtcgaccgggtcgacggt
gtgccgccggcgatcgccatcgaccagaccaacccggtgcgcaccagccgcagcacggtc
ggcacgatgaccgagctgaacgaccacctgaagctgctgtacgcccgcgcggcccagctc
ttcgaccgccagaccgcgctgccggtgcgccacgacacgccggagaccatccacgacgac
ctcgccgcgcgcgccgccgcggccggcgacccgcggctcgtgttcagcttcccggtcgag
ctgccggcggacaccacgcccgagcagcaggagcagtggctgtcggctgccggcttcacg
cgcgtgcaaagcgagcgtgtcgtcgagggccgcaagatcctcgacgtcgtcgccgaccgc
ctgcgcttcgcgggcgccgagcgcgcgcgcgtgatggaagcgatcgagctcgcgctcaag
cgcggcggcggccggctcacggtgcacgtcggcgacgacggcacgacctggaaatacagc
accgggctgcactgccccgagagcgacatccgctacgccgagccgcagccggcgatgttc
agcttcaactcggcctacggcgcctgcgacacctgccgcggcttcgggcgtgtcatcggc
gtcgacttcggcctcgtcatccccgacgagcgcaagacgctgcgcaacggcgccatcaag
ccgctgcagacgccggcctgggccgagtgccaggacgacctgatcaagtacgccggcgag
gccggcatcccgcgcgacaccgcctggaaccagctgaccaaggcgcagcgcgactgggtc
atcgaaggctcgccgaactggaccggcaactggaacaagcagtggtacggcatccgccgc
ttcttcggttacctggagagcaaggcctacaagatgcacatccgcgtgctcttgtccaag
taccgcagctacacgccctgcacggcctgcggcggcgcgcggctcaagctcgaaccgctg
ctctggcgcctgggcacgaaggccgacgccgacgcggtgctgccgccgtcgcagcgctac
ctgccggtcggtgtcgcctggacgcgcgagcagctccaagcgctgcccggtctcggcctg
cacgacctgatgcagctgtcgatcgagcgcctgcggcgtttcttcgacggcctgacgctg
cccggcacgatgctcgacgaggcgctgaagctgctgctcgacgaggtgcgcacgcggctc
aagtacctcaacgacgtcggcctgggctacctgacgctggaccgccagagccgcacgctg
tccggcggcgaggtccagcgcatcaacctgacgaccgcgctcggcacctcgctggtcaac
acgatgttcgtgctcgacgagccctcgatcggcctgcacccgcgcgacatggggcgcatc
gtcaccgcgatgcaccggctgcgcgacgccggcaacacgctggtcgtcgtcgagcacgac
ccggcggtgatgctggccgccgaccgcctgatcgacatgggccccggccccggtgaacgc
ggcggccgcatcgtcttcgacggcacgcccgacaccgcgcgcgaggccgacacgctgacc
ggcgcctacctcggcggccggcgccaggtcggcatgggcatccggcgcgcggtcgcggcc
tcgacgccgcggctgctgctggaaggcgcgcgcgagcacaacctgaagaacgtcagcgtc
gagctgccgctgcagcgcctggtcgtcgtcaccggcgtcagcggctcgggcaagagcacc
ctgatccaggacgtgctgtacccggcgctggcgcgccacttcggcaagccgaccgagacc
ccgggcgcgcacgatcgcctgctcggcaccgactggctggccgacgccgtcttcgtcgac
cagagcccgatcggcaagaccgcacgcagcaacccggcgagctacgtcggcgccttcgac
gagctgcgcaagctgttcgccgacgcgccgctggcgcgcgagcgcggctacaccgccggc
accttcagcttcaacgccggcgacggccgctgcccgacctgcggcggctcgggcttcgag
cacgtcgagatgcagttcctgtccgacgtctacctgcgctgccccgactgcgacggccgc
cgctaccgcgccgagatcctcgacgtgaagctggtgcgcgggcccatgcagctgtcgatc
gccgacgtgctggacctcaccgtcgccgaggccgcgcactggttccagcaggaccgcgag
gtcgtgcagcgcctgcagcccatcgtcgacgtcggcctggactacgtgcgcctgggccag
ccggtgccgacgctgtcgggcggcgaggcgcagcggctcaagctcgccggcttcctggca
gaggccgccgccgggccgcgccagcccgcggcacggcgcggcacgctgttcctgttcgac
gagccgaccaccggcctgcacttcgacgacatcgccaagctgatgcgcgccttgcgcaag
ctgctggaggcggggcattcgctgctggtcatcgagcacaacctcgacgtcatccgcgcc
gccgactggatcgtcgacctcggccccgaaggcggcgaggctggcggcgaactcgtctgc
gccggcacgcccgaggacctgaaggcgcatctggcctcgcacaccggcgtcgcgctgcgc
gagtacgaggcggcgctgggcctgggcgtggcgcgcgccgccgagcgctcggccgaaggc
gccgacggcctgccgctgcagacgctggtgcgcgcccgccggcgcgagcgccaggccgag
gacgacacgatccgcatcgtcaacgccaaggaacacaacctcaagaacctgtcggtgcag
atcccgcgcggcaagttcaacgtcgtcaccggggtcagcggctcgggcaagagcacgctg
gccttcgacatcctgttcaacgaaggccagcggcgctacctggagagcctgaacgcctac
gcgcgcagcatcgtgcagccggccggccgtcccgaggtcgacgccgtctggggcatcccg
ccgacggtggccatcgagcagcgcctgtcgcgcggcggccgcaagagcacggtcgcgacg
accaccgagctgtggcacttcctgcgcctgctgtgggtgaagctcgggctgcagcactgc
gtcaaggacggcgcgccggtgcgcgcgcagagcaccgagagcatcgccgcgcagctgctg
cgcgaccaccgcggccagcacgtcggcctgctggcgccgctggtcgtcaaccgcaagggc
gtctacaccgacctcgccaagtgggcctcggcgcgcggccacacgcatctgcgtgtcgac
ggcgagttcgtgccggtgtcgccgttcccgcggctggaccgcttcaaggagcacaccatc
gagctgccggtcggctccctggtcgtcgacccggccggcgaagccgagctgcgctcgttg
ctgtccaaggcgctggagctgggcaagggcgtgctgcacctgctgcatccgctggacggc
ctggccgaggcgatggacggcggcggcaacggccgcggcctcggcgaactgaaggtcttc
tcgaccaaacgcgcctgcccggtctgcggcaccagctaccccgagctggacccgcgcatg
ttcagctacaacagcaaacacggctggtgcacgcactgcgtcggcaccggcctggcgctg
acgcgcgagcagcgcaaggccttcgacgactcggtgcgcgacgaggacaacaagggccgc
gaacagagcttcccgtccgaggagcccgagctcgagggcctggccgaccagccgtgtccg
gaatgccacggcgcacgcctgaacccggcggcgctggcggtgactttcgacgacgagtcg
atcggcgccatcgcccggctgtcggtgcgcgagacgcgcgcctgggtcgagcagctggaa
ctgaccggccgcgacgccgagatcgcgcgcgacatcgtcgccgagatccgcagccggctg
cagttcctcgaggacgtcggcctgggctatctgacgctggaccgtgccgcgccgacgctg
tcgggcggcgaggcgcagcgcatccgcctggcggcgcagctgggcagcaacctgcagggc
gtctgctacgtgctcgacgagccgacgatcggcctgcacccgcgcgacaaccgcatcctg
ctcgacgcgctgcacaagctcggcgaccagggcaacacgctggtcgtcgtcgagcacgac
gaggacacgatccggcgcgccgagcacatcatcgacatcggcccgagcgccggcgtgcgc
ggcggccgcctcgtcgcccagggttcggtggccgacctgtcggcggcgcccgagtcgctg
accgggcgtttcctcgccgcgccgccgaagcacccgctgcaggcgcgccgcccggtcgag
gccgacgcaccggcgctgcgcctcaccggcgcgtcgctgcacaacctgaagtcggtcgac
gtcacggtgccgctgaagcgcctggtcgccgtcaccggcgtcagcggctcgggcaagagc
acgctggcgcgcgacgtgctgctggccagcgtgcaggccgcggtgacgcagaagtcgacc
cgggccgggcgcgacgcgatcgtcgccaacggcttccacggcctcgtcggctgcagcggg
ctgacgggcttcgagcccatcgaccgcgtgctcgaggtcgaccagacgccgatcggcaag
acgccgcgctcctgcccggcgacctacatcggcttctgggacgcgatccgcaagctcttc
gccgagacgctggaagccaaggcgcgcggctacgccgccaaccgcttcagcttcaacacc
ggcgacggccgctgcccggcctgcgaaggccagggcatgcgcacgatcgagatgagcttc
ctgcccgacgtgaaggtgccctgcgacacctgccacggtgcccgcttcaacccggagacg
ctggccgtcacctggcgcggcaagagcatcggcgacgtgctgcgcatggaggtcgacgag
gccgtcggcttcttcgccagcatgccggcgatcgcccacccgctgcagttgctgaaggac
gtcggcctgggctatctgacgctgggccagccgagcccgacgctgtcgggcggcgaggcg
cagcgcatcaagctcgtcaccgagctgtccaaggtgcgcgacgacgtcacgcggcgcggc
aaccgattgccgcacacgctgtacgtgctcgacgaaccgacggtcggcctgcacatggcc
gacgtcgaacgcctggcgcgcgtgctgcaccggctggtcgacgccggccacagcgtcgtc
gtcatcgaacacgacctggacgtcatcgccgaggccgactggatcctcgacctgggcccc
gagggcggcggcgaaggcggccgcgtggtggccgccggcacgccggagcaggtggtggcc
gccggcacgcacaccgggcgcgcgctggcgccggtgctggcgcgctag
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