Rubrivivax gelatinosus: RGE_45970
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Entry
RGE_45970 CDS
T01803
Name
(GenBank) RNA polymerase sigma factor
KO
K02405
RNA polymerase sigma factor FliA
Organism
rge
Rubrivivax gelatinosus
Pathway
rge02020
Two-component system
rge02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
rge00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
RGE_45970
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
RGE_45970
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rge03021
]
RGE_45970
09183 Protein families: signaling and cellular processes
02035 Bacterial motility proteins [BR:
rge02035
]
RGE_45970
Transcription machinery [BR:
rge03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
RGE_45970
Bacterial motility proteins [BR:
rge02035
]
Flagellar system
Flagellar assembly proteins
Stator
RGE_45970
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r4
Sigma70_r2
Sigma70_r4_2
Sigma70_r3
Motif
Other DBs
NCBI-ProteinID:
BAL97930
UniProt:
I0HY43
LinkDB
All DBs
Position
4923893..4924810
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AA seq
305 aa
AA seq
DB search
MISLEGVPSALVARNQSWVRQQAQSLVRHLPANVEKADLIQVGLIAVAQASLSFVWEGDP
ESEEAREAFARYARQRVRGAMIDELRQMDVLTRAQRRKIKVMQIARERWRSKNGTEPGLA
ELARLCKMDVDEIALLEQLAQASQQRSSSGGDDDEPDFAERHHPATEKDEVEARVDTAIV
LRHLETFFAQLPERERQVIDAYLGVGMTPVELAASLKVTPSRVSQMYHGLLRRMAVRFGH
APQQRATDRARRPSRADMEALVAQRERDLQAQPEAGPWGEMMEDVLVSPAERFGIRIDVP
PGTRW
NT seq
918 nt
NT seq
+upstream
nt +downstream
nt
atgatctcgctggagggggtgccgtcggccctggtggcccgcaatcagagctgggtgcgt
cagcaggcgcagtcgctggtgcggcatttgccggccaacgtggagaaggccgacctgatc
caggtcgggctgatcgccgtcgcgcaggcctcgctcagcttcgtctgggagggcgacccg
gagtccgaagaggcgcgcgaagccttcgcgcgctacgcccgccagcgcgtgcgcggcgcg
atgatcgacgagctgcgccagatggacgtgctgacgcgcgcccagcgccgcaagatcaag
gtgatgcagatcgcgcgcgaacgctggcgctcgaagaacggcaccgaacccggcctcgcc
gagctggcgcggctgtgcaagatggacgtcgacgagatcgcgctgctcgagcagttggcc
caggccagccagcagcgcagcagctccggcggcgacgacgacgaacccgacttcgccgaa
cgccaccacccggcgaccgagaaggacgaggtcgaggcgcgcgtggacaccgcgatcgtg
ctgcgccacctggagaccttcttcgcccagctcccggagcgcgagcgccaggtcatcgac
gcctacctgggcgtcggcatgacgccggtggaactggccgcctcgctgaaggtgacgccg
tcacgcgtgtctcagatgtaccacgggctgctgcgccgcatggcggtgcgtttcggccac
gcgccgcagcagcgtgccaccgaccgggcacgccgccccagccgcgccgacatggaagcg
ctggtcgcgcagcgcgagcgcgatctgcaggcgcagcccgaagccgggccgtggggcgag
atgatggaagacgtgctggtctcgcccgccgaacgcttcggcatccgcattgacgtgccg
cccgggacgcgctggtaa
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