Rubrivivax gelatinosus: RGE_46050
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Entry
RGE_46050 CDS
T01803
Symbol
rpoN
Name
(GenBank) RNA polymerase sigma-54 factor RpoN
KO
K03092
RNA polymerase sigma-54 factor
Organism
rge
Rubrivivax gelatinosus
Pathway
rge02020
Two-component system
rge02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
rge00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
RGE_46050 (rpoN)
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
RGE_46050 (rpoN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rge03021
]
RGE_46050 (rpoN)
Transcription machinery [BR:
rge03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
RGE_46050 (rpoN)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
HTH_38
HTH_IclR
DUF3349
HTH_23
Motif
Other DBs
NCBI-ProteinID:
BAL97938
UniProt:
I0HY51
LinkDB
All DBs
Position
4930844..4932349
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AA seq
501 aa
AA seq
DB search
MKPSLQVRLSQHLALTPQLQQSIRLLQLSTLELHQEVEQMLEQNPFLEMDEESPTPFDAP
AERAAADRVAERDDGGDGAAEPAPAEVDAAEFGTTERDDWENGTERDDFDGIRETPSSAA
PEGDDELDPQERRAGVGTLQDHLRAQVAGMRLSPEDFAALNVLIESLDDDGYLADPLEDI
AARLADMLDLDDDEQRESLLDRLQCALRWLQSLEPTGVGARSLSECLVLQLRTLSRCEAR
EVAIRICEHSLELLARRDVRKLTAATGAGEDLLRQAQALIVACEPKPGRPFAPAESNIIV
PDVIVQKAGRGFKVVLNPDVMPKLRINDLYAQAIRGQRGSGGGLSSRLQEARWFMKNIQQ
RFDTILRVSKAIVERQKGFFTHGAIAMKPLVLREIADELGLHESTISRVTTAKYMATPQG
TFELKYFFGSSLNTEAGGNASSTAVRALIQQLVSAEDSAKPLSDSQLSQMLEEQGIQVAR
RTVAKYREALKIAPASLRRAI
NT seq
1506 nt
NT seq
+upstream
nt +downstream
nt
atgaagccgtccctgcaggttcgcctgtcccagcacctggcgttgacgccgcagctccag
cagtcgatccggctgctgcagctgtcgacgctggagctgcaccaggaagtcgagcagatg
ctcgagcagaacccgttcctggagatggacgaggagtcgccgacgcccttcgacgcgccg
gccgaacgggccgcggccgaccgcgtcgccgagcgcgacgacggcggcgacggtgccgcc
gagccggcgccggccgaggtcgacgccgccgagttcggcaccaccgaacgcgacgactgg
gagaacggcaccgaacgcgacgacttcgacggcatccgcgagacgccgagttcggcggcg
cccgaaggcgacgacgagctcgacccgcaggagcgccgcgccggcgtcggcacgctgcag
gaccatctgcgcgcccaggtcgccggcatgcgtttgtcgcccgaggacttcgcggcgctg
aacgtgctgatcgagtcgctggacgacgacggctacctcgccgacccgctggaagacatc
gccgcgcgcctggccgacatgctcgacctggacgacgacgagcagcgcgagagcctgctc
gatcgcctgcagtgcgcgctgcgctggctgcagagcctggagccgaccggcgtcggcgcg
cgctcgttgtccgagtgcctggtgctgcagctgcgcacgctgtcgcgctgcgaggcgcgc
gaggtcgcgatccgcatctgcgagcactcgctggagctgctggcgcggcgcgacgtgcgc
aagctgaccgcggccaccggcgccggcgaggatctgctgcgccaggcgcaggcgctgatc
gtcgcctgcgagcccaagcccgggcggccgttcgcgccggccgagtcgaacatcatcgtg
cccgacgtcatcgtccagaaggccgggcgcggcttcaaggtcgtgctcaacccggacgtg
atgcccaagctgcgcatcaacgacctctacgcccaggcgatccgcggccagcgcggcagc
ggcggcgggttgtcgtcgcggctgcaggaggcgcgctggttcatgaagaacatccagcag
cgcttcgacaccatcctgcgcgtgtccaaggccatcgtcgagcgccagaagggcttcttc
acccacggcgcgatcgcgatgaagccgctggtgctgcgcgagatcgccgacgagctgggc
ctgcacgagagcacgatctcgcgcgtgacgacggccaagtacatggccacgccgcaaggc
accttcgagctgaagtacttcttcggcagctcgctgaacaccgaggccggcggcaacgcg
tcgagcaccgcggtgcgcgcgctgatccagcagctggtctcggccgaggacagcgccaag
ccgctgtcggacagccagctctcgcaaatgctcgaggagcagggcatccaggtcgcacgc
cgcaccgtcgccaagtaccgcgaggcgctgaagatcgcgccggcctcgctgcgccgcgcg
atctga
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