Roseomonas gilardii: RGI145_02905
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Entry
RGI145_02905 CDS
T04615
Name
(GenBank) uracil-DNA glycosylase
KO
K21929
uracil-DNA glycosylase [EC:
3.2.2.27
]
Organism
rgi
Roseomonas gilardii
Pathway
rgi03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
rgi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
RGI145_02905
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rgi03400
]
RGI145_02905
Enzymes [BR:
rgi01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.27 uracil-DNA glycosylase
RGI145_02905
DNA repair and recombination proteins [BR:
rgi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
RGI145_02905
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF4130
UDG
Motif
Other DBs
NCBI-ProteinID:
APT59041
UniProt:
A0A1L7AJW8
LinkDB
All DBs
Position
1:673436..675007
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AA seq
523 aa
AA seq
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MHSVALEAPDDFAGWRAAARALVIAGIAPERVSWSSPADPPALLAGPPPPEAPEDAPAPR
VPRAFPELAEQVIRHRDPERFALLHRLLHRLQAERGLLEVASDPDVGRAEAMARAVRRDA
HKMHAFVRFREMRVAPGEDGARFVAWFEPGHHILRAEAGFFRRRFAALRWSILTPGGSAH
WEGPGEGPGEGPEGGEVRFGPGARRADAPAEDAAEDLWRTYFGAIFNPARLKTGAMLAEM
PRRYWRNLPEARDIPRLIAEAPARVAAMVERGATPPAPRRQRTAHLVSLPGGRPDGLHPV
APSRVGTAAMPHAQTQADSDVPAALAALKREIETRNDLPDWAGQATQLVFGEGPPAALLM
FVGEQPGDEEDLAGRPFVGPAGRLFNRAMEEAGVARDEAYVTNAVKHFKFAPTGKRRLHQ
TPDAGDITYYRPFLEHEIALVAPRLLVTLGATALRAVTGRAMPVTKVRGNVLRAPDGRLF
YPTVHPSYLLRIPDSAMKAREYDRFVEDLAKAAATARSLPAAA
NT seq
1572 nt
NT seq
+upstream
nt +downstream
nt
atgcatagcgtcgccctggaggcgcccgacgacttcgccggctggcgggcggcggcgcgg
gcgctggtgatcgccggcatcgcgccggaacgggtctcctggtccagccccgccgatccg
cccgccctgctggccgggccaccgccgccggaggcaccggaggacgccccggcgccgcgc
gtgccaagggccttcccggaactggccgaacaggtgatccgccaccgcgatccggagcgc
ttcgccctgctgcaccggctgctgcaccggctccaggcggagcgggggctgctggaagtg
gcctccgaccccgatgtggggcgcgccgaggccatggcccgcgcggtgcggcgggacgca
cacaagatgcatgccttcgtccgcttccgggagatgcgggtcgcgccgggcgaggacggc
gcccgcttcgtcgcctggttcgagccggggcaccacatcctacgcgccgaggcgggcttc
ttccggcggcgcttcgcggccctgcgctggagcatcctgacgcccggaggctcggcgcac
tgggaggggccaggagagggaccgggggagggaccggaaggcggagaggtccgcttcggc
cccggcgcccgccgcgccgatgccccggccgaggatgcggcggaggatctctggcgcacc
tacttcggcgccatcttcaaccctgcccggctgaagaccggcgcgatgctggcggagatg
ccccgccgctactggcgcaacctgcccgaggcgcgcgacattccccgcctgatcgccgag
gcccccgcccgggtcgccgccatggtggagcgcggcgccaccccgcccgccccaaggcgc
cagcggacggcgcatcttgtctccctcccgggcggccgtccggatggcctgcacccggtg
gccccctcgcgcgttggaaccgccgccatgccccatgcccagacccaggcggacagcgac
gtccccgccgccctcgccgcgctgaagcgcgagatcgagacccgcaacgacctgccggac
tgggccgggcaagcgacgcagctcgtcttcggcgaggggcctcccgctgccctgctgatg
ttcgtgggcgagcagccgggcgacgaggaggatctcgccggccggcccttcgtcggcccc
gccgggcggctcttcaaccgggcgatggaggaggcgggcgtcgcgcgggacgaggcctat
gtcaccaacgcggtgaagcacttcaaattcgccccgaccggcaagcggcgcctgcaccag
acgccggatgccggagacatcacctattaccggcccttcctggagcacgagatcgccctg
gtggcgccgcgcctgctggtcacgctcggcgccacggcgctgcgcgccgtcaccggccgc
gccatgccggtgaccaaggtgcggggcaacgtgctgcgcgcgccggacgggcgcctcttc
tacccgaccgtccacccatcctatctgctgcggattcccgattccgccatgaaggcccgc
gaatacgaccgtttcgtggaggatctggccaaggccgccgccaccgcgcgcagcctgccc
gccgcggcctga
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