Roseomonas gilardii: RGI145_03580
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Entry
RGI145_03580 CDS
T04615
Name
(GenBank) hypothetical protein
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
rgi
Roseomonas gilardii
Pathway
rgi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rgi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RGI145_03580
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rgi03019
]
RGI145_03580
03009 Ribosome biogenesis [BR:
rgi03009
]
RGI145_03580
Enzymes [BR:
rgi01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
RGI145_03580
Messenger RNA biogenesis [BR:
rgi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
RGI145_03580
Ribosome biogenesis [BR:
rgi03009
]
Prokaryotic type
rRNA processing factors
RGI145_03580
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
APT56326
UniProt:
A0A1L7AC17
LinkDB
All DBs
Position
1:complement(815315..818560)
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AA seq
1081 aa
AA seq
DB search
MTKRMLIDASHPEETRLVVMDGNRIEDFDVEAADRLPLKGNIYLAKVVRVEPSLQAAFVE
YGGNRHGFLAFSEIHPDYYQIPVADRQRLLEMQAQEAEEEDEDEAELDTAAERPAPEDDR
DLRRREARESRGSRSGRQRSASPSTQEEPAVDTAPPAGDAPAAPEDTVPEAVTTETGAAN
QGPHQVFGEAIPEAPREAGEETAPLPAAPEAAQTAPADATLPEPPQSAEARDGAENDSDD
APRPGRAQPMSMHVDQVSEGDPVREAGDALVLDDAPEIPPETLGGDAEGNGEEDRSRERR
IPPRFLRHYKIQEVIRRRQIMLVQVVKEERGNKGAALTTYISLAGRFSVLMPNSPRGGGV
SRKITQVADRKRLREAVEEMSLPKGMSIIVRTAGAQRPKPEIRRDGEYLLRLWDDIRERT
MGSTAPALIYEEADLIKRSLRDSYGRDIDDVEVEGEAAWKQARDFMRMIMPQHERRVRLY
RDPVVPLFVKAGVEQQLDAMMSPVVQLRSGGYIVINQTEALVAIDVNSGRNTRDRHIEDT
ALRTNMEASEEIARQLRLRDLAGLIVIDFIDMESSKHDAQVERRLKESLRTDRARIQVGR
ISHFGLLEMSRQRLRPSLTEHAFMTCPHCQGRGIVRSLESSALHVLRAIEEEGAKRRASE
ILVHAAEPVAMHILNNKREWLANIESRFNMHVMLAGEHEMSEAQFRIERLKAQTMPAPQP
VNRAPALRMDYLPEAVAEEPEEAEEELEAEAAPAGDDKAEDRSEGKAEEKGENGRRRRRR
RRGGRREGGERPEAEAEAAGEGDTGEEQPVPADEAGPPDQPSDEAPSIPAEAETAATDGE
KSPEAQAGERGEENRGRRRGRRGGRRRQEEGSEQTEESSEAAAPRRGERVASRYTGPTPA
DPFGGAYDPVMDALAAAEAAAEAAARRLTSGELPPLSVSITAGPPPEVPAVLSGEDAPAQ
PSEFPPAPEAAVVTDVEAVVVANLAEPVVEAPAPVEAPTPEATAPEATAPEATAPEVTVP
EAMPAVATTPETPATEPAGVEPEAGGATPDTAEPQVGEPVKPVVLDGTSPSQARRAGWWR
R
NT seq
3246 nt
NT seq
+upstream
nt +downstream
nt
atgaccaagcgcatgctgatcgacgcctcccacccggaagagacccggctggtggtgatg
gatggcaaccggatcgaggacttcgacgtcgaggcggctgaccgcctccccctcaagggc
aacatctacctggcgaaggtggtccgcgtggagccgagcctccaggcggccttcgtcgag
tatggcggcaaccgccacggcttcctggctttcagcgagatccaccccgactactaccag
atccccgtcgccgaccggcagcgcctgctggagatgcaggcgcaggaggccgaggaggag
gacgaggacgaggcggagctcgacaccgccgccgagcgccccgcccccgaggacgaccgc
gacctgcgccgccgggaagcccgggagtcccgtggctcccgctccggacgccagcgttcc
gccagcccctccacccaggaggaaccggcggtggacaccgccccgcccgccggggacgcc
cccgccgcgccggaggacaccgtcccggaggccgtgaccacggagaccggggccgcgaac
caaggcccgcaccaggtcttcggcgaagccatccccgaggcgccgcgcgaggcgggcgag
gaaaccgcccccctccccgccgccccggaggccgcgcaaaccgcccccgccgacgccacg
ctccccgaaccgccccaatccgccgaggcccgggatggcgccgaaaacgactccgacgac
gccccccgccccggccgcgcccagcccatgtccatgcatgtggaccaggtctccgagggc
gacccggtgcgcgaggcgggcgatgccctggtgctcgacgacgcgcctgagatccccccc
gagaccctgggcggcgatgccgagggcaacggcgaggaggaccgcagccgcgagcgccgc
atccccccccgcttcctgcgccactacaagatccaggaggtgatccgccgccggcagatc
atgctggtgcaggtcgtgaaggaggagcgcggcaacaagggcgcggcgctgaccacctac
atctcgctggccggccgcttctcggtcctgatgccgaactcgccgcgcggcggcggcgtt
tcccgcaagatcacccaggtcgccgaccgcaagcgcctgcgcgaggcggtggaggagatg
agcctgcccaagggcatgagcatcatcgtccgcaccgccggcgcccagcgccccaagccc
gagatccggcgcgacggcgagtacctgctccgcctctgggacgacatccgcgagcggacc
atgggctccaccgccccggccctgatctacgaggaggcggacctcatcaagcggtcgctg
cgcgacagctacggccgcgacatcgacgacgtggaggtcgagggcgaggccgcctggaag
caggcccgcgacttcatgcgcatgatcatgccgcagcatgagcggcgcgtgcgcctctac
cgcgacccggtggtgcccctcttcgtcaaggcgggggtggagcagcagctcgacgccatg
atgtcgcccgtcgtccagctccgctcgggcggctacatcgtcatcaaccagaccgaggcg
ctggtcgccatcgacgtgaactccggccgcaacacacgcgaccggcacatcgaggatacc
gccctccgcaccaacatggaggcgtcggaggagatcgcgcggcagctccgcctgcgcgac
ctcgccggcctcatcgtcatcgacttcatcgacatggagtcgagcaagcacgacgcccag
gtcgagcgccgcctgaaggaatcgctgcgcaccgaccgcgcccgcatccaggtcggccgc
atcagccatttcggcctgctggagatgagccgccagcggctccgtcccagcctgaccgag
cacgccttcatgacctgcccgcactgccagggccggggcatcgtgcgctcgctggaaagc
agcgccctgcacgtcctccgcgcgatcgaggaggaaggcgccaagcgccgcgcctccgag
atcctggtccatgccgccgagccggtggccatgcacatcctgaacaacaagcgcgaatgg
ctcgccaacatcgagtcgcgcttcaacatgcatgtcatgctggcgggcgagcatgagatg
tccgaggcccagttccgcatcgagcgcctgaaggcccagaccatgccggcgccgcagccg
gtgaaccgcgcccccgccctgcgcatggactacctgcccgaggcggtggccgaggagccg
gaggaggccgaggaagagctggaggccgaggccgccccggccggcgacgacaaggccgag
gatcggtccgagggcaaggcggaggagaagggcgagaacggccgccgccgccgccgccgc
cgccgtggcggccgccgcgaaggtggcgagcgcccggaggccgaggccgaggccgcgggc
gaaggcgacaccggcgaggagcagccggtcccggcggacgaggccggcccgcccgaccag
ccctccgacgaggctccgtccatccccgccgaggcggaaaccgccgccacggacggtgag
aagtccccggaggcccaggcgggcgagcgtggcgaggaaaaccgtggccgccgtcgtggc
cgccgcggcggtcgccgccgccaggaggaaggcagcgagcagacggaggaatcctccgag
gccgccgcgccgcgccgtggcgagcgtgtcgccagccgctacaccggcccgaccccggcc
gatcccttcggcggggcctatgacccggtgatggatgccctggccgccgccgaggccgcc
gcggaggctgccgcccgccgcctgaccagcggcgagttgccaccgctttccgtgtcgatc
accgccgggccgccgccggaagtcccggccgtgctgagcggcgaggacgctccggcgcag
ccttccgagttcccgcccgcccccgaggcagcggtggtgaccgatgtggaggccgtggtc
gtcgcaaaccttgcggaacccgtcgtggaagcccccgctcccgtggaagcacccaccccg
gaagcaacggcccctgaagcgacggcccctgaagcgacggcccccgaagtgacggtgccc
gaggcaatgccggccgtggcaaccacccccgaaaccccggccaccgagcctgccggggtg
gagccggaggccggcggtgccacgccggacacggccgaaccccaggtgggtgagccggtg
aagcccgtggtcctggatgggacctcgccgtcccaggcgcgccgcgcgggatggtggcgg
cgttga
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