Roseomonas gilardii: RGI145_10370
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Entry
RGI145_10370 CDS
T04615
Name
(GenBank) MBL fold metallo-hydrolase
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
rgi
Roseomonas gilardii
Pathway
rgi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rgi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RGI145_10370
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rgi03019
]
RGI145_10370
Messenger RNA biogenesis [BR:
rgi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
RGI145_10370
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GFIT
Motif
Pfam:
RNase_J_b_CASP
RMMBL
Lactamase_B_2
Lactamase_B
RNase_J_C
Motif
Other DBs
NCBI-ProteinID:
APT57442
UniProt:
A0A1L7AFA9
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All DBs
Position
1:complement(2294836..2296482)
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AA seq
548 aa
AA seq
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MTEPTSDLALIPLGGTGEIGLNLNVYRCDGALLAVDCGIGFGGTDTPEAEVMVPDAGWLA
ERRDKLVGLVITHAHEDHLGAVAPLWPQLRCPIYASPFASAVLRRKLGEAGLLHQAELHT
IPLGGSLELGPFAMRFLRVAHSVPEAQALSIRTSYGTVLHTGDWKLDPNPLLGLPTDEAG
FEALGREGVLAMVCDSTNALVEGYSGSEADVRRELTALIGELRGRVAVTCFATNVARVES
IAHAARANGRQVALFGRSLRNADAAARECGYLKDTPPFLSEDEAGYLPDEELLIVCTGSQ
GEPRSALSKIAADTHPNISLGEGDTVIYSSRQIPGNERAIARVQDQLRRAGCRVVTADER
QVHVSGHPAKGELKRLYELVRPRFSVPVHGEWRHLEQHAELARAIGATPILIEDGDVLEL
SGNKPDVVDSVPTGRLAIDGDRLLPLEGGVLSARRRMLFNGVIVASLAVDRDGRVRGEPQ
VSAPGLFEQLDAAPGQIAAELARAVEELPLNLRRDDDPLREAARAILRRALGRRLRKRPM
VDVHLLRV
NT seq
1647 nt
NT seq
+upstream
nt +downstream
nt
atgacagaacccacctccgacctcgccctgatcccgctcggcgggaccggggagatcggc
ctgaacctgaatgtgtaccgctgcgacggagccctgctcgcggtggattgcggcatcggc
ttcggcggcaccgacacgccggaggccgaggtcatggtccccgatgccggctggctggcg
gaacggcgcgacaagctggtcgggctggtcatcacccacgcgcatgaggatcatctcggc
gccgtggcaccgctctggccacagcttcgctgcccgatctatgccagccccttcgcctcg
gcggtgctgcggcggaagctgggcgaggccggtctgctgcaccaggcggagctccacacc
attcccctgggtggcagcctggaactgggccccttcgccatgcgcttcctccgggtggcg
cattcggtgccggaggcacaggcgctttcgatccgcacttcctatggcacggtgctgcac
accggcgactggaagctggacccgaacccgctgctgggcctgcccaccgacgaggcgggc
ttcgaggcgctggggcgcgagggcgtcctggccatggtctgcgacagcaccaatgcgctg
gtcgagggctattccggcagcgaggcggatgtccggcgcgagctgacggcgctgatcggc
gagttgcgcggccgggtggcggtgacctgcttcgccaccaatgtggcgcgggtggagagc
atcgcccatgccgcgcgggccaatggcaggcaggtggcgctgttcgggcgctcgctccgc
aatgccgatgcggcggcacgggaatgcggctacctgaaggacacgccgccctttctgagc
gaggacgaggcgggctacctgccggacgaggaattgctgatcgtctgcaccggcagccag
ggcgagccacgctcggctctgtccaagatcgccgccgacacccatcccaacatctcgctg
ggggagggggacacggtgatctattcctcccgccagatccccggcaacgagcgcgccatc
gcccgggtgcaggaccagctccgccgcgccggttgccgcgtggtgacggccgacgagcgg
caggtccatgtttccggccatccggcgaagggggagctgaagcgcctctacgagctggtg
cggccgcgcttctccgtgccggtgcatggcgagtggcgtcatttggagcagcatgccgag
ctggcccgcgccatcggagcgacgccgatcctgatcgaggatggcgacgtactggaactg
tcgggcaacaagccggatgtggtggattccgtccccacggggcgtttggccatcgatggc
gaccggctcctgccgctggagggtggggtgctctcggcgcgccggcggatgctgttcaac
ggggtgatcgtcgcctccctggccgtggaccgggacgggcgtgtgcgaggggagccgcag
gtttccgcgcccggcctgttcgagcagctcgacgcggcccccgggcagatcgctgccgaa
ctggcacgggcggtggaggagttgccactcaacctgcggcgggacgacgatccgctgcgt
gaggccgcccgagccatcctgcgccgggcgctcggccgccggctgcgcaagcggccgatg
gtggatgtccatctgctgcgggtctga
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