Rhodanobacter glycinis: CS053_02950
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Entry
CS053_02950 CDS
T06136
Name
(GenBank) DEAD/DEAH box helicase
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
rgl
Rhodanobacter glycinis
Pathway
rgl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rgl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CS053_02950
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rgl03019
]
CS053_02950
Enzymes [BR:
rgl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CS053_02950
Messenger RNA biogenesis [BR:
rgl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CS053_02950
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
RhlB
Motif
Other DBs
NCBI-ProteinID:
QEE23584
UniProt:
A0A5B9DWS2
LinkDB
All DBs
Position
714815..716569
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AA seq
584 aa
AA seq
DB search
MSQTVLTDTFFANFNLHPLLQQGLDEAGFTRCTPIQELTLPVALAGRDVAGQAQTGTGKT
CAFLVALMNRLLTTPAVAERRDSDPRALVIAPTRELAIQIDKDARAIGAHTGLRTALIYG
GVDYDKQRQQLKDGCDIIIATPGRLLDYHKQDVFGFNGVEVMVVDEADRMFDLGFIKDVR
FIFRRLPAREQRQVLLFSATLSHRVLELAYEHMHEAEKLVVETDNVTADKVRQVVYFPAK
EEKMPLLMNLLEREKPSRSIVFVNTKAAAERITDRVKRQGYRAGALSGDVPQLKRQKLLQ
RFQDSQLEMLVCTDVAARGLHIPAVSHVFNYDLPQDAEDYVHRIGRTARLGAEGDAISFA
CDLYAMSLPEIEEYIGQKIPVATIEPDMLVMPKPHAIDPEFVAAAAADSAAFGDKVEARG
DEKKPSRHGERRSGSRGDSRSSGGRNGERGPRPASERKPRPAASVEAAEVAVVAPAAAAT
PAGGETPAAEGAPKRRRRRGGRGRRRNGEGAPVNGAENAVTSESASKTERSGNRPARTER
PPRERTNGEAGHRPSRQVATQAAVASAPKKPSLFRRLSRLFTGR
NT seq
1755 nt
NT seq
+upstream
nt +downstream
nt
atgtcacaaaccgtactcaccgatacctttttcgccaacttcaaccttcatccgctgctg
cagcaaggcctggacgaagccggcttcacccgctgcacgcccatccaggaattgaccctg
ccggtggcgctggccggtcgtgacgtcgctggccaggcccagaccggcaccggcaagacc
tgcgccttcctggtcgcgctgatgaaccgcctgctgaccacgccggcagtggccgagcgc
cgggattccgatccgcgcgcgctggtgatcgcgccgacccgcgagctggccattcagatc
gacaaggatgcccgtgccatcggcgcccataccggcctgcgcaccgcgctgatctacggc
ggtgtcgattacgacaagcagcgccagcagctcaaggacggctgcgacatcatcatcgcc
accccgggccgcctgctcgattaccacaagcaggacgtgttcggattcaacggcgtcgag
gtgatggtggtcgacgaggccgaccgcatgttcgacctcggcttcatcaaggacgtgcgc
ttcatcttccgccgcctgccggcgcgcgagcagcgccaggtgctgctgttctccgccacg
ctgagccatcgcgtgctggaactggcctacgagcacatgcacgaggccgagaagctggtg
gtggagaccgacaacgtcaccgccgacaaggtgcgccaggtggtctacttcccggccaag
gaagagaagatgccgctgctgatgaacctgctggagcgcgaaaagcccagccgcagcatc
gttttcgtcaacaccaaggccgccgccgagcgcattaccgatcgcgtgaagcggcagggt
taccgcgccggcgcgctgtccggcgacgtgccgcagctcaagcgccagaagttgctgcag
cgcttccaggacagccagctcgagatgctggtctgcaccgacgtggccgcgcgcggcctg
cacattcccgcggtcagccatgtcttcaactacgacctgccgcaggacgccgaggattac
gtgcaccgcatcggccgcaccgcgcgcctcggtgccgaaggcgacgcgatcagcttcgcc
tgcgacctgtacgcgatgagcctgcccgagatcgaggaatacatcggccagaagatcccg
gtcgccacgatcgagccggacatgctggtaatgcccaagccgcacgcgatcgatccggag
ttcgtcgccgctgccgcggccgacagcgccgcgttcggcgacaaagtggaagcacgtggc
gacgagaagaagccgtcacgccatggcgagcgtcgcagcggcagccgtggcgacagtcgc
agcagcggtggccgcaatggcgaacgcggcccgcgtccggcctccgaacgcaagccgcgc
ccggccgcatcggtcgaggcggccgaagtggcggtggtcgcgcccgctgctgccgcgacg
ccggccggtggcgaaacgcctgccgcggaaggggcgccgaagcggcgccgccgtcgtggt
ggtcgcggtcgccgtcgcaacggcgaaggtgcaccggtgaatggtgccgagaatgccgtc
accagcgagtcggcctccaagaccgagcgcagtggcaatcgccctgcccggaccgagcgg
ccgccgcgcgagcggacgaatggcgaagccggccatcgtccgtcgcggcaggtagccacg
caggccgccgtcgcgtcagcaccgaagaagccaagcctgttccgtcgcctcagccgcctg
tttaccggccgctga
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