Rhodanobacter glycinis: CS053_04925
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Entry
CS053_04925 CDS
T06136
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
rgl
Rhodanobacter glycinis
Brite
KEGG Orthology (KO) [BR:
rgl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rgl03019
]
CS053_04925 (hrpA)
Enzymes [BR:
rgl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
CS053_04925 (hrpA)
Messenger RNA biogenesis [BR:
rgl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
CS053_04925 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
Helicase_C
DEAD
OB_NTP_bind
HA2_C
AAA_22
AAA_19
nSTAND3
AAA_25
SRP54
NACHT
AAA_30
T2SSE
HA2_N
PhoH
ABC_tran
AAA_23
Motif
Other DBs
NCBI-ProteinID:
QEE23916
UniProt:
A0A5B9E0V6
LinkDB
All DBs
Position
1198802..1202974
Genome browser
AA seq
1390 aa
AA seq
DB search
MPLMLQNNRDIRRVDELRRALDGVCSRDFGRLLGRWRGLSKRPDDARLAALGVDIEASAA
KRRARVEAKPAIRLDESLPITSRADDIVKLIREHQVVVIAGETGSGKTTQLPKLCLAAGR
GEAGLIGCTQPRRLAARSVARRVAEELGTQLGEQVGFQVRFTDQVSERTLVKFMTDGILL
AETQGDPWLSAYDTIIIDEAHERSLNIDFLLGYLKRLALKRPELKIIVTSATIDTARFAE
HFGDAPVVSVEGRAYPVELRWRPVDGPATSGGEVVSAPAKGGRGQGASSRQGMQQGSAEH
VAAVLDEIIADRSLGHGPGDVLVFLPGEREIRDAHLLLSRRQYRETEILPLYARLSASEQ
DRVFKPGPKRRVVLATNVAETSLTVPRIRYVVDTGSARVKRYSQRSQIERLHVESVSQAA
ADQRKGRCGRIGPGICYRLYDEADFNARPEFSDPELLRSSLANVILRMLALKLGEVDGFP
FLDAPDPRVVADGYRRLAEIMAIDEQRVLTPIGRMLARLPIDVQLARMLVEAEKLGALRE
LLVVVAFLSIQDPRERPADARQQADAAHAAFADPKSDFAGVLNLWRDYHAAHEEFTQSKL
RDWCSRHFLSFMRMREWRELHRQLLLVVKELGWSSSAPSSSRGGDAVSPSPLRGEGRGEG
PRSRSAGRNKRVSHERSGKHPPLTSILSPTGRGGEGEERVVDQQAAADHLFETIHRSLLA
GLPTQVGRKDERGVYQGTRERKFQVFPGSALSKVPPNWIFSAQILDVGGKVWGMANARVE
SVWIEQQAAHLLRMSCRDAHWSKKRGCVVAYEQVSLFGLTLVERRPVTFQKQDPALAHDI
FLREALARGDIDSKADFVRANQRVLEDARGIEAKQRREGLIRHEDELVDFFRGKLPEDIA
SSRGLDAWYRSARPAEQAALRWSLDDVMAGGAGLDPKAFPAMLDIQPAGNKVTAQRYRLE
YRFVPGDEADGVTLHLPLAMLNALPAARCEWLVPGLLADKVAELIRGLPKALRRNFVPAP
DFARAFAEAEAPRDEPLTRALATFLKRATGVDIEAGEFAAIELAPHFRMRFRLHDDNGRT
LAAGRDLAALRAQWEGQAREAFSRKTDVELTREDVASWDFEEIPRDVRSSGGLLAFPALV
DLGETVALRVFERRDEAAEAHGAGVLRLLRNALASDLKQARRRLPIGNPLALKYAPLGGV
DGLREDLVEGGIADMVARLDLDVRTAGAFEALHAQASRELFGAAVERLKLAGPIIEAQAE
LKPWLEPPLIGFARASYDDLREQLDVLLAPGLLRELPPARLAHLPRYLKAMRLRAERLRQ
DPAKDQQRMLQVMPYWREYLQHRAAGDEGLDELRWLIEEWRVSLFAQELKTAEPVSAKRL
AKASASIKPA
NT seq
4173 nt
NT seq
+upstream
nt +downstream
nt
atgcctctcatgctccaaaacaaccgtgacatccgccgcgtggacgagctgcgtcgggcg
ctcgatggcgtgtgcagtcgcgacttcggacgcctgctggggcgctggcgcgggctgtcg
aagcgccccgacgacgccaggctggcagcgctgggtgtcgatatcgaggcttccgcggcc
aagcgccgcgcgcgggtcgaggcgaagccggcgatccggctggacgaatcgctgccgatc
acctcgcgcgccgacgacatcgtcaagctgatccgcgagcatcaggtcgtggtgatcgct
ggtgagaccggttcgggcaagaccacccagttgcccaagctgtgcctggccgccggtcgc
ggcgaagccggcctgatcggttgcacccagccgcgccggttggccgcgcgttcggtggcg
cgtcgcgtggccgaggagctgggcacccaactgggcgagcaggtgggtttccaggtgcgc
ttcaccgatcaggtgagcgagcgcacgctggtgaagttcatgaccgacggcatcctgctg
gccgagacgcagggtgatccgtggttgtcggcctacgacacgatcatcatcgacgaagcg
cacgagcgcagcctcaacatcgacttcctgctcggctatctgaaacggctggcgttgaag
cggccggagctgaagatcatcgtcacctcggcgaccatcgacactgcgcgtttcgccgag
catttcggcgacgcgccggtggtatcggtggaagggcgcgcgtatccggtggagttgcgc
tggcgaccggtggatgggccggcgacgtcgggaggcgaggtggtgtccgcgcccgcgaag
ggcggtcgcgggcagggcgcgtcatcgcggcagggcatgcagcagggcagcgccgaacac
gtggctgccgtgctcgacgagatcatcgccgaccgcagcctgggccatggcccgggtgac
gtgctggtgttcctgccgggcgagcgcgagatccgcgacgcgcatctgctgctgtcgcgc
cggcaataccgcgagacggaaatcctgccgctgtacgcgcgactgtccgccagcgaacag
gatcgcgtgttcaagcccggtccgaagcggcgcgtggtgctggccaccaacgtcgccgag
acttcgctcaccgtgccgcgcatccgttacgtggtcgacaccggcagcgcgcgcgtcaag
cgttacagccagcgcagccagatcgagcggctgcacgtggaatcggtgtcgcaagccgcg
gcggatcagcgcaagggccgctgcggtcgcatcggcccgggcatctgctatcgcctgtac
gacgaggccgacttcaacgcgaggcccgaattttccgatcccgagctgctgcgttcctcg
ctggccaacgtgatcctgcgcatgctggcgctgaagctgggcgaggtcgacggctttccg
ttcctcgacgcgcccgatccgcgcgtggtggcggatggctaccggcgcctggcagaaatc
atggcgatcgacgagcagcgcgtgctcacgccgatcgggcgcatgctggcgcggttgccg
atcgacgtgcagcttgcgcgcatgctggtggaagcggaaaagctgggagcgctgcgcgaa
ctgctggtagtggtggctttcctcagcatccaggacccgcgcgagcgcccggccgacgcc
cgccagcaagccgatgccgcgcatgccgctttcgccgatccgaagtccgatttcgcgggt
gtgctgaacctgtggcgcgattatcacgccgcgcacgaggagttcacccagtcgaagctg
cgtgattggtgctcgcgccatttcctcagcttcatgcgcatgcgcgaatggcgcgagctg
catcggcaactgttgctggtggtgaaggagttggggtggtcgagctctgctccctcttca
tcgcggggcggtgatgctgtttctccctctcccctgcggggagagggccggggtgagggg
ccacgctcgcgaagcgctggcaggaacaagcgtgtttcgcatgagcgctctggcaagcac
ccacccctcacctcaatcctctccccaacggggagaggaggcgaaggcgaagagcgcgtt
gttgatcaacaggctgcggcggaccacctcttcgagacgatccaccgctcgctcttggcg
ggcctgcccactcaggtcggccgcaaggacgaacgcggcgtctaccagggcacgcgcgag
cgcaagttccaggtgttccccggttcggccttgtcgaaagtgccgccaaactggatcttc
tccgcacagatcctcgacgtgggcggcaaggtctggggcatggccaatgcacgcgtcgag
tcggtgtggatcgagcaacaggcggcgcacctgctgcgcatgtcgtgccgtgacgcgcac
tggtcgaaaaagcgcggctgcgtggtggcctacgagcaggtcagcctgttcggtttgacc
ctggtcgaacgccggccggtgacattccagaagcaggaccccgcgctggcgcatgacatc
ttcctgcgcgaagcactggcgcgtggcgatatcgattcgaaggccgatttcgtgcgtgcc
aaccagcgcgtgctggaggatgcccgcggcatcgaggcgaagcagcgtcgcgagggcttg
atccgccacgaggacgaactggtcgatttcttccgcggcaagttgccggaggacattgcc
agcagtcgcgggctggatgcgtggtatcgcagcgcacgccctgccgagcaagccgcgctg
cgctggtcgctggacgacgtgatggcgggtggcgccgggctcgatccgaaggctttcccg
gcgatgctggacatccagccggcaggcaacaaggtgacggcgcagcgctatcgcctcgaa
taccgtttcgtgcctggcgacgaggccgatggcgtcaccctgcacctgccgctggcgatg
ctcaatgcgttgccggcggcgcgttgcgaatggctggtgccgggcttgctggccgacaag
gtggccgagctgatccgcggcctgcccaaggcgctgcgccgcaacttcgtgcccgcgccg
gatttcgcgcgggctttcgccgaggcagaggcgccgcgcgacgagccgctgaccagggcg
ctggccacgttcctgaaacgtgccaccggcgtggatatcgaggcgggcgaatttgccgcc
atcgagctggcgccgcatttccgcatgcgtttccgcctgcatgacgacaatggccgcacg
ctggcggcgggtcgcgatctggccgccttgcgtgcgcaatgggaaggccaggcgcgcgag
gcgttctcgcgcaagaccgacgtggagctgacgcgcgaagatgtggccagctgggatttc
gaggagattccgcgcgacgtgcgttcgtccggtggcctgctggctttcccggcgctggtc
gatctcggcgagacggtggcgctgcgtgtgttcgagcgccgcgacgaggcggccgaggcg
catggcgccggcgtgctgcgcctgttgcgcaatgcgctggccagcgacctgaagcaggcg
cgccgacgcttgccgatcggcaacccgctggcgctgaagtacgcgccgctgggtggtgtg
gatggcctgcgcgaagacctggtcgaaggcggcattgccgacatggtggcgcggctcgat
ctcgatgtgcgcacggctggcgcgttcgaagccttgcatgcgcaggcctcgcgcgaactg
ttcggtgcggcggtggagcggctgaaactggccgggccaatcatcgaggcgcaagccgaa
ttgaagccatggctggaaccgccgctgatcggctttgcccgcgccagctacgacgacttg
cgcgaacagctcgacgtattgctcgcgccgggcctgctacgcgaattgccgccggcgcgg
ctggcgcacctgccgcgctacctcaaggccatgcgcctgcgtgccgagcgtttgcgccag
gatccggcgaaagaccagcagcgcatgctgcaggtcatgccgtactggcgtgagtatctg
cagcaccgcgccgccggtgacgaaggcctggatgaactgcgctggctgatcgaggaatgg
cgcgtgtcgctgttcgcgcaggaactgaagaccgccgagccggtgtcggcgaagcgtctg
gcaaaagccagcgcttcaataaaaccagcctag
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