KEGG   Mediterraneibacter gnavus: RGna_00975
Entry
RGna_00975        CDS       T06719                                 
Name
(GenBank) PolC-type DNA polymerase III
  KO
K03763  DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7]
Organism
rgn  Mediterraneibacter gnavus
Pathway
rgn03030  DNA replication
rgn03430  Mismatch repair
rgn03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:rgn00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    RGna_00975
   03430 Mismatch repair
    RGna_00975
   03440 Homologous recombination
    RGna_00975
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:rgn03032]
    RGna_00975
   03400 DNA repair and recombination proteins [BR:rgn03400]
    RGna_00975
Enzymes [BR:rgn01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     RGna_00975
DNA replication proteins [BR:rgn03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    DNA polymerase III holoenzyme
     RGna_00975
DNA repair and recombination proteins [BR:rgn03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    DNA polymerase III holoenzyme
     RGna_00975
SSDB
Motif
Pfam: DNA_pol3_alpha RNase_T PHP DNA_pol3_finger DNA_pol3_a_NI HHH_6 DNA_pol3_a_NII tRNA_anti-codon Rv2179c-like RNase_H_2 DEDDh_C
Other DBs
NCBI-ProteinID: QHB22176
LinkDB
Position
182157..186668
AA seq 1503 aa
MEQVKNEKTFFEVFPTLRADGELKMLFQDVEVKKITTNSTREFLHIHMVSHHLIPKKVIW
KMEQSIKEQLFGTASVAIQIEEFYVLSELYTLETLLAEYKESLVLELEKKSVLAASMFEQ
AELHFEGEKIVCVELLDSIVSEGKKEYIVTLLEEVLSRRFGMQAEIRVLYREQEENQSRE
YDEQRIQQEINAIFERRARQKGEILQKPISERQTDSAKEKKTADSGKKESAKSGFKKGEF
RKKEFQRPLKQGDDPSLVYGKNFEDEPLTLDQVVTEMGEITIHGKIISFDTREIRNEKTI
LMFSVTDFTDTITVKMFVRNDQLAELLGDIKKGAFVKIKGVTTIDKFDGELTIGSVTGIK
KIGDFTVSREDLSPVKRVELHCHTKMSDMDGVSEVKSIVKRAHDWGHPAIAITDHGVAQS
FPDANHYIETLDKDDPFKVIYGVEGYVVDDLTEIAVNAGEQTLDDTYIVFDIETTGFSAI
KDKIIEIGAVKVKDGAIVEKFSTFVNPKRPIPFEITQLTSITDEMVLDAPDIESVLPEFL
EFVGDGVLVAHNAGFDVGFIEQNCRYQEIEPDFVSVDTVALARVLLPTLSKYKLNIVAKA
LGISLENHHRAVDDAGATAEIFVKFVEMLKDRNITTLKEMNRFGDMNVNAIRKLPTHHII
ILVKNDIGRFNLYQLISASHLTYFARRPRIPKSLLNQHREGLIIGSACEAGELYQAILNQ
KSPQAVARLAEFYDYYEIQPLGNNQFMIDSDRYGDINSKEDLQNINREIVSLGEKFKKPV
VATCDVHFLDPEDEVYRRIIMAGKGFGDADTQPPLYLRTTDEMLEEFSYLGSAKAREIVI
DNPNRICDMVEKISPVNPNKCPPVIENSEQNLRDICYNKAHEIYGENLPEPVQTRLEREL
TSIISNGYSVMYIIAQKLVWKSNDDGYLVGSRGSVGSSFVATMAGITEVNPLSPHYYCSE
CHYSDFDSEEVRAFAGGCGFDMPDKNCPNCGAKLVKAGFDIPFETFLGFKGDKEPDIDLN
FSGDYQAKAHRYTEVIFGEGHTFKAGTIGTLADKTAFGYVKNYYEERGHRKRKCEIDRIL
QGCTGIRRSTGQHPGGIVVLPHGHDINEFTPVQHPANDMTTDIITTHFDYHSIDHNLLKL
DILGHDDPTMIRTLEEYITSDALENEYNDENPFDATKIPLDDKKVLSLFHDTSALGIKPE
DIDGCNLGCLGIPEFGTDFVIQMVQDANPQSLSDLIRISGLSHGTNVWLGNAQVLIESGK
ATISTAICTRDDIMIYLINQGVDSALSFTIMESVRKGKGLKPEWEETMKEKDVPDWYIWS
CKQISYMFPKAHAAAYVMMAYRIAYCKINYPLAYYGAYFGIRANAFSYELMCQGKDKLNY
YMKDYKRRSDSLSNKEQDVLKDMKIVQEMYARGYEFLPLDIYKAKATKFQIIDGKLMPPL
SSIEGMGEKAAEAVEEAAKDGPYLSLDDFRQRTKVSKTVIEFMSDLGLFGNLPQSNQLSL
FDF
NT seq 4512 nt   +upstreamnt  +downstreamnt
ttggaacaggtaaagaacgaaaagacattttttgaggttttcccgaccttgcgggcagat
ggagaattgaaaatgttgtttcaggatgtggaagtgaaaaagatcacgaccaattctaca
cgagaatttttgcatattcatatggtcagtcatcatctgatcccgaaaaaggtgatctgg
aaaatggagcagagtatcaaggagcagctgtttggaacggcatcggtggcaatccagatc
gaagagttttatgtgttatcggagctgtatacactggagacgctgcttgcagaatacaag
gagagtcttgttctggaactggaaaagaaaagtgtactggcagccagtatgtttgaacag
gcagagctgcatttcgaaggggaaaaaatcgtatgtgtagagcttttagacagcattgtt
tcggaaggaaagaaagaatatatcgtgacgcttctggaagaggtactgagccgcagattt
gggatgcaggcggaaatccgtgtactttaccgggagcaggaggaaaatcagagccgggaa
tatgatgagcagcgcatccagcaggaaatcaatgcgatctttgagagaagagcaagacaa
aagggagagattttgcagaagccgatttcagagaggcagacggactctgcaaaagagaag
aaaacagcagattccggcaagaaggagagtgcaaaatccggattcaaaaaaggagaattc
agaaagaaagagttccagcgtccgcttaagcagggggatgatccgtctcttgtttatggt
aagaattttgaagatgaacctctgactctggatcaggttgtcacagagatgggtgagatc
actattcatggtaagatcatcagctttgatacaagggagatccgcaacgagaaaacgatt
ctgatgttttctgtgacagattttacagacacgattacagttaagatgtttgtaaggaac
gatcagctggcggagcttttgggagatattaaaaaaggggcctttgtgaagatcaaaggg
gtgacgaccattgacaaattcgatggggagctgaccataggttctgttaccggaattaag
aagattggagactttactgtttcgagagaagatttaagcccggtcaaacgggtggagctt
cattgtcatacaaaaatgagtgatatggacggtgtgtccgaggtgaagagcatcgtaaaa
agagctcatgactgggggcatccggcaatcgcgattaccgatcacggagttgcccagtcg
ttcccggatgccaatcattatatcgagacgcttgataaggatgatccgtttaaagtaatc
tacggagtggaaggatatgtggttgatgatctgacagagattgcggtcaatgccggggag
cagacactggatgacacatatattgtgttcgatatcgagacgacaggtttttctgcaatc
aaggataagattatagagatcggggcagtgaaggtaaaagatggtgctatcgtagaaaaa
ttcagtacatttgtcaatccaaaacgtccgattccgtttgaaattacacagctgaccagt
atcacggatgagatggtcttagatgcaccggatattgagagcgtactgcctgagtttctg
gaatttgtgggagatggtgttcttgtggcgcacaatgccgggtttgatgtgggctttatc
gagcagaattgcagatatcaggagatcgaaccggattttgtctcagtagatacggtggcg
cttgcgagagtgctgctgccgaccttatcaaaatacaagctgaatatcgtggcaaaggca
ctgggaatctctctggaaaatcatcaccgtgcggtggatgatgcaggagcaacggcggaa
attttcgtgaagtttgtagagatgctcaaagacaggaatatcacaacgctcaaagagatg
aaccggtttggggatatgaatgtgaatgccatccggaagctgccaacacaccatatcatc
attctggtaaaaaacgatatcggaagattcaatctgtaccagctgatctcagcttcgcat
ctgacatattttgcgagaagaccgaggattccgaaaagtcttttgaatcagcacagagag
ggtctgatcataggaagtgcctgtgaggccggtgagttgtatcaggcgatcctgaaccag
aaatctccgcaggctgttgcaaggctggcagaattttatgattattatgaaatccaacct
cttggaaacaaccagtttatgatcgacagtgaccggtatggagatatcaattccaaagag
gatttgcaaaatatcaaccgggagatcgtcagtcttggggaaaaattcaaaaagcctgtc
gtggcgacctgtgatgtacattttctggatccggaggacgaagtgtaccggaggatcatc
atggcaggaaaaggattcggagatgcggacacccagcctcctttatatcttcggacaacg
gatgagatgctggaagagttctcttatcttggttccgcgaaagccagggagatcgtcatc
gacaatccgaacaggatctgcgatatggtggaaaagatctctccggtcaatccgaacaaa
tgccctccggtcattgaaaattctgagcagaatctaagagatatctgttacaacaaagcg
catgagatttatggagaaaatctgcccgaaccggtgcagaccaggctggagagagaactg
acatccatcatttccaatggatattcggtgatgtatatcattgcgcagaagctggtgtgg
aaatccaatgatgacggttatctggtaggttcccgaggttctgtaggatcctcctttgtt
gcgactatggcgggaatcacagaggtaaatcctttgagtccgcactattattgcagtgag
tgtcattacagtgactttgattccgaagaagtccgcgcatttgcgggtggatgcgggttt
gacatgccggataaaaactgtccgaactgtggggccaaactggtaaaagccggatttgac
attccatttgagaccttccttggatttaaaggagacaaggagccggatatcgacctgaac
ttttccggagactaccaggcaaaagcgcaccggtatacagaggtcatcttcggagaaggg
catacgttcaaagccggaaccattggtacactggcagataagacggcatttggatatgtg
aagaattattatgaggagcgcggacatcggaagcggaaatgtgagattgaccggatttta
cagggatgtacggggatcagaaggagtacgggacagcatccgggaggaatcgtggtattg
cctcacgggcatgacatcaatgagtttacaccggtacagcacccggcaaatgatatgact
acggatattattacgactcattttgattaccattccattgaccacaaccttttgaaactt
gacattctggggcatgatgatccgaccatgatccgtactctggaggagtatattacatct
gatgcgctggagaatgagtacaatgacgagaatccgtttgatgcgacaaagattccgctg
gatgataaaaaagtactttctctgtttcacgataccagtgcattgggaatcaaacctgag
gatattgacggctgtaatctgggatgtcttggaatcccggaattcggtacggatttcgta
atccagatggtacaggatgccaatccgcagtctctttctgatctgatccgtatttccggt
ctgtcccacggaacgaatgtgtggcttggaaatgcacaggttctgatcgaatcgggaaag
gcaacgatttccactgcaatctgtacccgagacgatatcatgatctatctgatcaatcag
ggtgtggacagcgcgctgtcatttacgatcatggagagtgtgcgaaaaggaaaaggacta
aagccggaatgggaagaaaccatgaaggaaaaggacgtgccggactggtatatctggtcc
tgtaagcagatcagctatatgttcccgaaggcacatgcggcggcatatgttatgatggca
tatcgaatcgcttattgtaagatcaattatccgctggcttattacggtgcgtattttggg
attcgtgccaatgcattttcgtatgaactgatgtgtcagggaaaggataaactgaattac
tacatgaaagattataagcgccggtcagattctctgagcaacaaggaacaggatgtactg
aaggatatgaagattgtacaggaaatgtacgcaagaggttatgagttcctgcctttggat
atttacaaggcgaaggcaacaaaattccagatcattgacggaaaactgatgcctcccctc
tccagtatcgaagggatgggagaaaaggcggcagaggctgtggaggaggctgcaaaagac
ggaccgtatctgtctttggatgatttcagacagcgaacaaaggtgagcaagaccgtgatc
gaatttatgtcagacctggggttgtttggaaatcttccgcagagcaatcagctttccttg
tttgacttttag

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