Mediterraneibacter gnavus: RGna_00975
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Entry
RGna_00975 CDS
T06719
Name
(GenBank) PolC-type DNA polymerase III
KO
K03763
DNA polymerase III subunit alpha, Gram-positive type [EC:
2.7.7.7
]
Organism
rgn
Mediterraneibacter gnavus
Pathway
rgn03030
DNA replication
rgn03430
Mismatch repair
rgn03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rgn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
RGna_00975
03430 Mismatch repair
RGna_00975
03440 Homologous recombination
RGna_00975
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rgn03032
]
RGna_00975
03400 DNA repair and recombination proteins [BR:
rgn03400
]
RGna_00975
Enzymes [BR:
rgn01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
RGna_00975
DNA replication proteins [BR:
rgn03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
RGna_00975
DNA repair and recombination proteins [BR:
rgn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
RGna_00975
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
RNase_T
PHP
DNA_pol3_finger
DNA_pol3_a_NI
HHH_6
DNA_pol3_a_NII
tRNA_anti-codon
Rv2179c-like
RNase_H_2
DEDDh_C
Motif
Other DBs
NCBI-ProteinID:
QHB22176
LinkDB
All DBs
Position
182157..186668
Genome browser
AA seq
1503 aa
AA seq
DB search
MEQVKNEKTFFEVFPTLRADGELKMLFQDVEVKKITTNSTREFLHIHMVSHHLIPKKVIW
KMEQSIKEQLFGTASVAIQIEEFYVLSELYTLETLLAEYKESLVLELEKKSVLAASMFEQ
AELHFEGEKIVCVELLDSIVSEGKKEYIVTLLEEVLSRRFGMQAEIRVLYREQEENQSRE
YDEQRIQQEINAIFERRARQKGEILQKPISERQTDSAKEKKTADSGKKESAKSGFKKGEF
RKKEFQRPLKQGDDPSLVYGKNFEDEPLTLDQVVTEMGEITIHGKIISFDTREIRNEKTI
LMFSVTDFTDTITVKMFVRNDQLAELLGDIKKGAFVKIKGVTTIDKFDGELTIGSVTGIK
KIGDFTVSREDLSPVKRVELHCHTKMSDMDGVSEVKSIVKRAHDWGHPAIAITDHGVAQS
FPDANHYIETLDKDDPFKVIYGVEGYVVDDLTEIAVNAGEQTLDDTYIVFDIETTGFSAI
KDKIIEIGAVKVKDGAIVEKFSTFVNPKRPIPFEITQLTSITDEMVLDAPDIESVLPEFL
EFVGDGVLVAHNAGFDVGFIEQNCRYQEIEPDFVSVDTVALARVLLPTLSKYKLNIVAKA
LGISLENHHRAVDDAGATAEIFVKFVEMLKDRNITTLKEMNRFGDMNVNAIRKLPTHHII
ILVKNDIGRFNLYQLISASHLTYFARRPRIPKSLLNQHREGLIIGSACEAGELYQAILNQ
KSPQAVARLAEFYDYYEIQPLGNNQFMIDSDRYGDINSKEDLQNINREIVSLGEKFKKPV
VATCDVHFLDPEDEVYRRIIMAGKGFGDADTQPPLYLRTTDEMLEEFSYLGSAKAREIVI
DNPNRICDMVEKISPVNPNKCPPVIENSEQNLRDICYNKAHEIYGENLPEPVQTRLEREL
TSIISNGYSVMYIIAQKLVWKSNDDGYLVGSRGSVGSSFVATMAGITEVNPLSPHYYCSE
CHYSDFDSEEVRAFAGGCGFDMPDKNCPNCGAKLVKAGFDIPFETFLGFKGDKEPDIDLN
FSGDYQAKAHRYTEVIFGEGHTFKAGTIGTLADKTAFGYVKNYYEERGHRKRKCEIDRIL
QGCTGIRRSTGQHPGGIVVLPHGHDINEFTPVQHPANDMTTDIITTHFDYHSIDHNLLKL
DILGHDDPTMIRTLEEYITSDALENEYNDENPFDATKIPLDDKKVLSLFHDTSALGIKPE
DIDGCNLGCLGIPEFGTDFVIQMVQDANPQSLSDLIRISGLSHGTNVWLGNAQVLIESGK
ATISTAICTRDDIMIYLINQGVDSALSFTIMESVRKGKGLKPEWEETMKEKDVPDWYIWS
CKQISYMFPKAHAAAYVMMAYRIAYCKINYPLAYYGAYFGIRANAFSYELMCQGKDKLNY
YMKDYKRRSDSLSNKEQDVLKDMKIVQEMYARGYEFLPLDIYKAKATKFQIIDGKLMPPL
SSIEGMGEKAAEAVEEAAKDGPYLSLDDFRQRTKVSKTVIEFMSDLGLFGNLPQSNQLSL
FDF
NT seq
4512 nt
NT seq
+upstream
nt +downstream
nt
ttggaacaggtaaagaacgaaaagacattttttgaggttttcccgaccttgcgggcagat
ggagaattgaaaatgttgtttcaggatgtggaagtgaaaaagatcacgaccaattctaca
cgagaatttttgcatattcatatggtcagtcatcatctgatcccgaaaaaggtgatctgg
aaaatggagcagagtatcaaggagcagctgtttggaacggcatcggtggcaatccagatc
gaagagttttatgtgttatcggagctgtatacactggagacgctgcttgcagaatacaag
gagagtcttgttctggaactggaaaagaaaagtgtactggcagccagtatgtttgaacag
gcagagctgcatttcgaaggggaaaaaatcgtatgtgtagagcttttagacagcattgtt
tcggaaggaaagaaagaatatatcgtgacgcttctggaagaggtactgagccgcagattt
gggatgcaggcggaaatccgtgtactttaccgggagcaggaggaaaatcagagccgggaa
tatgatgagcagcgcatccagcaggaaatcaatgcgatctttgagagaagagcaagacaa
aagggagagattttgcagaagccgatttcagagaggcagacggactctgcaaaagagaag
aaaacagcagattccggcaagaaggagagtgcaaaatccggattcaaaaaaggagaattc
agaaagaaagagttccagcgtccgcttaagcagggggatgatccgtctcttgtttatggt
aagaattttgaagatgaacctctgactctggatcaggttgtcacagagatgggtgagatc
actattcatggtaagatcatcagctttgatacaagggagatccgcaacgagaaaacgatt
ctgatgttttctgtgacagattttacagacacgattacagttaagatgtttgtaaggaac
gatcagctggcggagcttttgggagatattaaaaaaggggcctttgtgaagatcaaaggg
gtgacgaccattgacaaattcgatggggagctgaccataggttctgttaccggaattaag
aagattggagactttactgtttcgagagaagatttaagcccggtcaaacgggtggagctt
cattgtcatacaaaaatgagtgatatggacggtgtgtccgaggtgaagagcatcgtaaaa
agagctcatgactgggggcatccggcaatcgcgattaccgatcacggagttgcccagtcg
ttcccggatgccaatcattatatcgagacgcttgataaggatgatccgtttaaagtaatc
tacggagtggaaggatatgtggttgatgatctgacagagattgcggtcaatgccggggag
cagacactggatgacacatatattgtgttcgatatcgagacgacaggtttttctgcaatc
aaggataagattatagagatcggggcagtgaaggtaaaagatggtgctatcgtagaaaaa
ttcagtacatttgtcaatccaaaacgtccgattccgtttgaaattacacagctgaccagt
atcacggatgagatggtcttagatgcaccggatattgagagcgtactgcctgagtttctg
gaatttgtgggagatggtgttcttgtggcgcacaatgccgggtttgatgtgggctttatc
gagcagaattgcagatatcaggagatcgaaccggattttgtctcagtagatacggtggcg
cttgcgagagtgctgctgccgaccttatcaaaatacaagctgaatatcgtggcaaaggca
ctgggaatctctctggaaaatcatcaccgtgcggtggatgatgcaggagcaacggcggaa
attttcgtgaagtttgtagagatgctcaaagacaggaatatcacaacgctcaaagagatg
aaccggtttggggatatgaatgtgaatgccatccggaagctgccaacacaccatatcatc
attctggtaaaaaacgatatcggaagattcaatctgtaccagctgatctcagcttcgcat
ctgacatattttgcgagaagaccgaggattccgaaaagtcttttgaatcagcacagagag
ggtctgatcataggaagtgcctgtgaggccggtgagttgtatcaggcgatcctgaaccag
aaatctccgcaggctgttgcaaggctggcagaattttatgattattatgaaatccaacct
cttggaaacaaccagtttatgatcgacagtgaccggtatggagatatcaattccaaagag
gatttgcaaaatatcaaccgggagatcgtcagtcttggggaaaaattcaaaaagcctgtc
gtggcgacctgtgatgtacattttctggatccggaggacgaagtgtaccggaggatcatc
atggcaggaaaaggattcggagatgcggacacccagcctcctttatatcttcggacaacg
gatgagatgctggaagagttctcttatcttggttccgcgaaagccagggagatcgtcatc
gacaatccgaacaggatctgcgatatggtggaaaagatctctccggtcaatccgaacaaa
tgccctccggtcattgaaaattctgagcagaatctaagagatatctgttacaacaaagcg
catgagatttatggagaaaatctgcccgaaccggtgcagaccaggctggagagagaactg
acatccatcatttccaatggatattcggtgatgtatatcattgcgcagaagctggtgtgg
aaatccaatgatgacggttatctggtaggttcccgaggttctgtaggatcctcctttgtt
gcgactatggcgggaatcacagaggtaaatcctttgagtccgcactattattgcagtgag
tgtcattacagtgactttgattccgaagaagtccgcgcatttgcgggtggatgcgggttt
gacatgccggataaaaactgtccgaactgtggggccaaactggtaaaagccggatttgac
attccatttgagaccttccttggatttaaaggagacaaggagccggatatcgacctgaac
ttttccggagactaccaggcaaaagcgcaccggtatacagaggtcatcttcggagaaggg
catacgttcaaagccggaaccattggtacactggcagataagacggcatttggatatgtg
aagaattattatgaggagcgcggacatcggaagcggaaatgtgagattgaccggatttta
cagggatgtacggggatcagaaggagtacgggacagcatccgggaggaatcgtggtattg
cctcacgggcatgacatcaatgagtttacaccggtacagcacccggcaaatgatatgact
acggatattattacgactcattttgattaccattccattgaccacaaccttttgaaactt
gacattctggggcatgatgatccgaccatgatccgtactctggaggagtatattacatct
gatgcgctggagaatgagtacaatgacgagaatccgtttgatgcgacaaagattccgctg
gatgataaaaaagtactttctctgtttcacgataccagtgcattgggaatcaaacctgag
gatattgacggctgtaatctgggatgtcttggaatcccggaattcggtacggatttcgta
atccagatggtacaggatgccaatccgcagtctctttctgatctgatccgtatttccggt
ctgtcccacggaacgaatgtgtggcttggaaatgcacaggttctgatcgaatcgggaaag
gcaacgatttccactgcaatctgtacccgagacgatatcatgatctatctgatcaatcag
ggtgtggacagcgcgctgtcatttacgatcatggagagtgtgcgaaaaggaaaaggacta
aagccggaatgggaagaaaccatgaaggaaaaggacgtgccggactggtatatctggtcc
tgtaagcagatcagctatatgttcccgaaggcacatgcggcggcatatgttatgatggca
tatcgaatcgcttattgtaagatcaattatccgctggcttattacggtgcgtattttggg
attcgtgccaatgcattttcgtatgaactgatgtgtcagggaaaggataaactgaattac
tacatgaaagattataagcgccggtcagattctctgagcaacaaggaacaggatgtactg
aaggatatgaagattgtacaggaaatgtacgcaagaggttatgagttcctgcctttggat
atttacaaggcgaaggcaacaaaattccagatcattgacggaaaactgatgcctcccctc
tccagtatcgaagggatgggagaaaaggcggcagaggctgtggaggaggctgcaaaagac
ggaccgtatctgtctttggatgatttcagacagcgaacaaaggtgagcaagaccgtgatc
gaatttatgtcagacctggggttgtttggaaatcttccgcagagcaatcagctttccttg
tttgacttttag
DBGET
integrated database retrieval system