Mediterraneibacter gnavus: RGna_04370
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Entry
RGna_04370 CDS
T06719
Name
(GenBank) tRNA pseudouridine(55) synthase TruB
KO
K03177
tRNA pseudouridine55 synthase [EC:
5.4.99.25
]
Organism
rgn
Mediterraneibacter gnavus
Brite
KEGG Orthology (KO) [BR:
rgn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
rgn03016
]
RGna_04370
Enzymes [BR:
rgn01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.25 tRNA pseudouridine55 synthase
RGna_04370
Transfer RNA biogenesis [BR:
rgn03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
RGna_04370
Prokaryotic type
RGna_04370
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TruB_N
TruB_C_2
TruB-C_2
DUF1348
Motif
Other DBs
NCBI-ProteinID:
QHB22782
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All DBs
Position
complement(841335..842255)
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AA seq
306 aa
AA seq
DB search
MVNGILNVYKEKGYTSHDVVAKLRGIVGQKKIGHTGTLDPDAEGVLPVCLGRATKVCDML
TEKDKTYEAVLLLGKETDTQDISGTVLRVGETEGLTQEQVKDCVMSFVGEYDQIPPMYSA
LKVNGKKLYELAREGKTIERKSRKVEIKEIRILEMALPRVRMEVSCSKGTYIRTLCHDIG
EKLGCFGCMESLLRTKVSRFEIESSLKLSEIQKKREEGKLSEIITPLDAVFFQYPAVTVK
KEGQALAYNGNEIPIRFVTDMEERKNQEWIRVYDLENHFIGIFCFDKNRKKLTVEKMFLD
QEEIRG
NT seq
921 nt
NT seq
+upstream
nt +downstream
nt
atggtaaatggaattctgaacgtatacaaagaaaaaggatacacatcccatgatgtagtg
gcaaagctgcgtggaattgtggggcagaagaagatcggacatacaggcacgctggacccg
gatgcggaaggcgtgcttcctgtttgtctgggaagagcaacaaaggtatgtgatatgctc
acggaaaaggataaaacatacgaggcggtcctgttgcttggaaaagagaccgatacccag
gatatttcaggaactgtgctgagagtgggagagacagaaggactcacgcaggagcaggta
aaagactgtgtgatgagttttgtgggggaatatgatcagataccgcccatgtattctgca
ctgaaagtaaacggcaaaaagctgtatgagctggcacgggaagggaagacgatcgagcgc
aaaagccgcaaagttgaaatcaaagagatccggatcctggaaatggcactgccgcgtgtg
aggatggaggtttcctgttccaagggaacctatatccggacattgtgtcacgatatcggt
gaaaagctgggttgctttggatgtatggagtcgcttcttcgtacaaaggtgagccgtttt
gagattgagagcagtctgaagctttcagaaatacagaaaaaaagagaggaaggaaagctt
tcagagattataacccctctggatgcagtgtttttccaatatcctgccgtgacggtaaaa
aaagaggggcaggcgcttgcgtataacggaaatgagattccaatccgctttgtaacagat
atggaagaaagaaaaaatcaggaatggatacgtgtatacgatctggaaaatcattttatc
ggtatcttctgttttgataaaaacaggaaaaaacttactgtggaaaagatgtttctggat
caggaagaaataagaggatga
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