Mediterraneibacter gnavus: RGna_04895
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Entry
RGna_04895 CDS
T06719
Name
(GenBank) ATP-dependent helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
rgn
Mediterraneibacter gnavus
Pathway
rgn03420
Nucleotide excision repair
rgn03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rgn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
RGna_04895
03430 Mismatch repair
RGna_04895
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rgn03400
]
RGna_04895
Enzymes [BR:
rgn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
RGna_04895
DNA repair and recombination proteins [BR:
rgn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
RGna_04895
MMR (mismatch excision repair)
Other MMR factors
RGna_04895
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
Viral_helicase1
AAA_11
AAA_14
DEAD
Spectrin_2
ResIII
Motif
Other DBs
NCBI-ProteinID:
QHB22882
LinkDB
All DBs
Position
complement(953500..955332)
Genome browser
AA seq
610 aa
AA seq
DB search
MSFNQAQQEAVSHNEGPCLVLAGPGSGKTLTIVGRIQKLIQTYHVSPEEILVITFTKYAA
VEMKNRFFSAMKGTRPAVTFGTFHGIYYGILKWAYRFGPENILSEEEKRQMLLQIVNRKE
IDEFEEEDFLKEIISEIGIVKNNGLKIEEYETTICGKETFREIYREYERKRNEERKIDFD
DMLLLCRDLFIKRPDILKKWQEKFRYILIDEFQDINQVQYDVIRMLAAPENNLFVVGDDD
QSIYGFRGADSRLMFQFQKDFPDAKQLLLDVNYRSSKNIVKNSLKVIANNEVRFDKKIRA
WKESGETLHVQEVKDPVEEASYVVEQIKKQMETGILAEEIAVLFRVHTDARAVVEALIDE
KIPFQMREHLPNLYNHFIAKDIMAYFRLAMGQRERKDFLQVMNRPKRYLGRDCLPGRVVS
FEEMRKFYCDKEWMQDRIDQFEWDLKMLAKMAPYAAIQYLKKKIGYDEFLREYATTKNMK
AADLREVLSEIEEAAKPFQTMEEWFVHVEEYTEALKKKEQQKEQNQEGVRLMTLHASKGL
EFHTVFLIEANEGRIPYQKAEKEQNVEEERRLFYVGMTRAKDVLKITYVKIKNGKEISPS
RFVEELFEGV
NT seq
1833 nt
NT seq
+upstream
nt +downstream
nt
atgagttttaatcaggctcagcaggaggcggtctctcacaatgagggaccgtgtcttgtt
cttgcgggaccgggttccggaaagacgctcacgatcgtgggcaggatccagaagctgatc
cagacgtatcatgtaagtccggaagagattctggtcatcacatttaccaaatatgcagca
gtggagatgaagaaccgctttttttcagcgatgaaggggactcgccctgctgtcaccttc
ggaacatttcatggaatttattatgggattttaaagtgggcatatcggttcggaccggag
aatattctgtcagaggaagaaaaacggcagatgctgcttcagatcgtcaacagaaaagag
attgatgaatttgaagaggaagatttcctgaaagaaattatttctgagatcgggatcgtg
aaaaacaacgggctgaagattgaagaatatgagacgacgatctgcgggaaggaaactttc
cgggagatatacagagaatacgaaagaaaacggaacgaagagcggaaaattgattttgat
gatatgctgctgctgtgcagagacctgttcataaaacggccggatattctgaaaaaatgg
caggagaagtttcgctatattctgatcgatgaatttcaggatatcaatcaggtgcagtat
gatgtcatccggatgcttgcggcgcctgaaaacaatctgtttgtggtaggagatgatgac
cagtcgatctatggatttcgcggagcggattccagactgatgtttcagtttcagaaggac
tttccagatgcaaaacagcttctcctggatgtaaactaccggtcttcgaaaaatattgtc
aaaaattctctgaaagtgatcgcaaacaacgaggtacggtttgacaaaaaaatccgggca
tggaaagaaagtggggagacactgcatgtacaggaagtgaaagatccggtggaggaagct
tcttatgtggtggaacagatcaaaaaacagatggaaacaggaattttggcagaggaaatc
gcagtactctttcgtgttcacacagatgcgagggcggttgtggaagctctgatcgatgaa
aagattccattccagatgcgggaacatctgccgaatctgtacaatcattttattgcaaaa
gatattatggcatatttcaggctggcaatggggcagcgtgagcgcaaagatttcctgcag
gtcatgaatcgtccgaaacggtatctgggaagagactgcctcccgggaagagtggtttct
tttgaggagatgcggaaattctattgtgataaagagtggatgcaggaccggatcgaccag
tttgaatgggatttgaaaatgcttgcgaaaatggctccatatgcggcaatccagtatttg
aagaaaaaaatcggatatgacgaatttctgcgggaatatgcgactacgaaaaacatgaaa
gctgcggatttaagagaagtactctctgagattgaagaggcggcaaagccgtttcagacg
atggaagagtggtttgtccatgtggaagaatatacggaagcactgaaaaagaaagaacag
caaaaagaacagaaccaggagggtgtccgtctgatgacattgcatgcgtccaaagggctg
gagtttcatacggtgtttttgatcgaggcaaacgagggacgaattccatatcagaaagca
gagaaagagcagaatgtagaagaagagcgcaggctgttctatgtgggaatgacccgggca
aaagatgtgctgaaaatcacatatgtgaaaataaaaaacggaaaggagatctctccttcc
cgctttgtagaggaactgttcgagggcgtctga
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