Mediterraneibacter gnavus: RGna_07525
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Entry
RGna_07525 CDS
T06719
Symbol
addA
Name
(GenBank) helicase-exonuclease AddAB subunit AddA
KO
K16898
ATP-dependent helicase/nuclease subunit A [EC:
5.6.2.4
3.1.-.-]
Organism
rgn
Mediterraneibacter gnavus
Brite
KEGG Orthology (KO) [BR:
rgn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rgn03400
]
RGna_07525 (addA)
Enzymes [BR:
rgn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
RGna_07525 (addA)
DNA repair and recombination proteins [BR:
rgn03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
AddAB pathway proteins
RGna_07525 (addA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
DEAD
ResIII
AAA_16
GxGYxYP_N
AAA_12
AAA_30
Motif
Other DBs
NCBI-ProteinID:
QHB23348
LinkDB
All DBs
Position
complement(1475620..1479204)
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AA seq
1194 aa
AA seq
DB search
MSVQWTEDQKKVIELRNRNILVSAAAGSGKTAVLVERIIQRLLDERDPLDVDRLLIVTFT
EAAAAEMKERIRDAIENALEDTPGNVHLQRQATLIHSARITTIHSFCLSVIREHFHAINL
DPGFRIAEEGELKLLRQDVLEEMLESCYDEGTEAFLEFAEKFSTGRSDRQLEEVILQLYE
YAGSYPQPEKWLNACVDNYQVENEHFSDAGFVQILIESIRQNLQGARILLNEALHICEES
DGPYLYAEALEADLMMIETMEKAETFEAFYGKINQIAWKRLSAKKDETIDPEKKEAVKML
REKAKKMVKDLQETCFYETPEELAEDLRNTGSTMEELVFLVTTFARLFAEKKRSRNVIDF
QDMEQFALQILTEEKDGSLVPSAVAREYQEQFEEVMIDEYQDSNLIQEAILTSVSTVSRG
SYNVFMVGDVKQSIYRFRLSRPELFMEKYDTYSQADSEKQRIDLDRNFRSRKEVLDATNY
VFEQIMHKSVGGVEYDARAALYPGADYPKSREQNGVSANRAELLLVDAQELEEEDNARRL
EARAVADRIKLLLLQGQVVDKKTKEYRPVQYKDIVILTRSIKGWADVFAQVLAEEGISAH
VGSREGYFETYEVSVLLDYLQILDNERQDLPLAAVLTSPFAGLDARELAKIRSTYPELFF
YEAVHAYASDDEKEKEPILQQKLKNFLCRVSEFRDMLPYTAMHDLLWEIIEKTGYGMCIS
AMPGGAQRMANVQMLVAKAAAYEGTSYKGLFNFVRYIEQLKKYNVDYGEANLADEQADTV
RIMSIHKSKGLEFPIVIVAGMGKLFNTQDVKGSIVIHPELGVGMDVIDLKKRTKAPTLLK
KVIQKQVAVENLGEEMRVLYVAMTRAKEKLILTGVCKDARTKLETLSTREKTAFLPYEVL
SANSYLDWLLPAASPAESSIGITVVDSLGAAQMEGAWEAADELTRNVLENWDTNQIHDAG
YREELKRQLDFAYPFAEEQRFQMKFTVSELKKRAYMEEEAGEVLYQEPEAVPLVPRFLGA
EEAASGAVRGTAYHKFLELLDFEKEYTRESLEEHLKHLQTEGRISPEIAEAVKTEDFLKF
LQCESGKRMHQAAKKKQLYKEQPFVLGVDSGEIYPDTECRAQLLVQGIIDVYFEEEDGLV
VLDYKTDRVRTADELVRRYQSQLTYYARALSQITGKAVKEKIIYSFALGKEINV
NT seq
3585 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtacagtggacagaagatcagaaaaaggtcattgaattaagaaacaggaatatt
ctggtctccgcagcggccggttccggaaaaacggcggttctggtagagcggatcattcag
agactgttggatgagagggatccgctggatgtagacaggctcttgatcgtgacatttacc
gaagcggcagcagcggaaatgaaagagcgaatccgggatgccattgaaaatgccctggaa
gacacaccgggaaatgtgcatttacagaggcaggcaacgctcatccacagcgcccggatc
acaacaatccacagtttttgcctgtctgtgataagggagcattttcatgccattaatctg
gatccgggatttcggatcgcagaagaaggggagttgaaattactgcgtcaggatgttctg
gaggaaatgctggagtcctgctatgatgagggaacggaggcttttctggaatttgcagag
aaattttctacggggagaagtgacaggcagctggaagaagtgatcctgcagttatacgaa
tatgcgggcagctatccacagccggaaaagtggctgaatgcgtgtgtggacaattatcag
gtggaaaacgaacatttttctgacgctggatttgtacagatcctgatcgaaagtatccgt
cagaacctgcagggggcaaggattctgctgaatgaggcgctgcatatctgtgaggagtct
gacggaccgtatctgtatgcagaggcgttggaagcggatcttatgatgatcgagactatg
gaaaaggcagagacgtttgaagcattttacgggaagatcaatcagattgcatggaagcgg
ctttctgccaaaaaggatgagacgattgatccagagaagaaagaagcagtgaagatgctg
cgggaaaaagccaagaagatggtaaaagatctgcaggaaacctgtttttacgaaacgccc
gaggaactggcagaagatttgcgaaatacaggaagtaccatggaagaactggtctttctt
gtgacaacctttgcaaggctgtttgcagagaaaaagagaagccgcaatgtgattgatttt
caggacatggagcagtttgccctgcagattctgacagaagaaaaagacggaagtctggta
ccatctgctgtggcgagagaatatcaggagcagtttgaggaagtgatgatcgacgagtat
caggacagcaacctgatccaggaagcgattctgaccagtgtgtctactgtgagccgcgga
agttacaatgtgtttatggtaggagatgtcaaacagagtatttaccgtttccgcctctcc
agaccggaactgtttatggaaaaatatgatacatacagccaggcagacagcgagaagcag
cgaatcgatctggaccggaatttccgaagccgcaaggaggtgctggatgccacgaactac
gtgtttgagcagattatgcacaaaagtgtgggcggtgtggagtatgatgcccgtgcggca
ctttatccgggagctgattatccaaagagcagggagcaaaacggagtatcggcaaatcgg
gcagagcttcttttagtagatgcacaggagctggaagaagaggacaatgcacgccgtctg
gaagcccgggcagtggcagaccgcatcaaactcttgcttttacaggggcaggtggtggat
aaaaagacaaaggaataccgtccggtacaatataaagatattgtgatcctgacgagaagc
atcaaaggctgggcagatgtgtttgctcaggttctggcagaagaaggaatttctgcacat
gtgggaagcagagaaggatattttgaaacgtatgaagtcagtgttcttctggattatctg
cagattctggacaatgagcgtcaggacctgccgctggcggcagtacttacgtcaccgttt
gcggggctggatgcgagagaactggcaaagataagaagtacgtatccggaactctttttc
tatgaagcggttcacgcctatgcgtctgatgatgaaaaggagaaggaaccaatcctgcag
caaaaactgaaaaacttcctttgccgggtgtcggaattccgggatatgcttccatataca
gcgatgcatgatctgttgtgggagattatagaaaaaacggggtacggtatgtgtatttcg
gcgatgccgggtggtgcacagcgaatggcaaatgtacagatgctggtcgcaaaggcagca
gcctatgaaggaaccagctataagggactgttcaattttgtgcggtatattgaacagctc
aaaaaatataatgtggattatggagaggcgaatcttgcagatgaacaggcggatacagtc
cgtatcatgagtatccacaaaagcaaggggctggaatttccaattgtgatcgtggcaggt
atgggaaaacttttcaatacgcaggatgtgaagggcagtattgtaatccatccggagctt
ggtgtgggaatggatgtgattgatctgaaaaagagaacaaaggctccgacactgttaaaa
aaagtaatccagaaacaggtggcagtggaaaacttaggggaagagatgcgggtgctctat
gtggcaatgacaagagcaaaggaaaagctcattctgacgggagtgtgcaaagatgcacgg
acaaagctggaaacactttccacaagggaaaaaacagcatttcttccatatgaagttctt
tctgcgaattcgtatctggactggctgcttcctgcggcatccccggcagaaagttcgatc
ggaattaccgttgttgacagtctgggcgcggctcagatggagggagcctgggaagcggcg
gatgaactgactcgaaatgtactggaaaactgggatacaaatcagattcatgatgccgga
taccgggaagagctgaaaagacagttggactttgcatatccgtttgcggaagaacagcgt
tttcagatgaaatttacagtttcagaacttaaaaaacgggcctacatggaagaggaggca
ggagaggtattatatcaggaaccggaagcagtgcctcttgttccgagatttttaggagcg
gaagaagcggcatccggagcagtcagaggaaccgcgtaccacaaatttctggagcttctt
gattttgaaaaagaatataccagagaaagtctggaggaacatttgaaacatcttcagaca
gaaggaaggatcagtccggagatcgcagaggctgtaaaaacggaagatttcctgaagttt
ctgcaatgtgaaagcgggaaacggatgcatcaggcggcaaagaaaaaacagttgtacaaa
gagcagccctttgtgctgggggtggattcaggagaaatttatccggatacagaatgcaga
gcacagcttctggtgcagggaatcatagatgtgtattttgaagaggaagacggacttgta
gtcttagactataagacagaccgggtaagaacggccgatgaacttgttcggagataccag
tcacagcttacatactatgcccgcgccctgtcacagattacaggaaaggcagtcaaagaa
aagatcatttattcatttgctcttggaaaggaaatcaacgtttaa
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