Mediterraneibacter gnavus: RGna_08435
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Entry
RGna_08435 CDS
T06719
Name
(GenBank) hypothetical protein
KO
K18198
rhamnogalacturonan exolyase [EC:
4.2.2.24
]
Organism
rgn
Mediterraneibacter gnavus
Brite
KEGG Orthology (KO) [BR:
rgn00001
]
09190 Not Included in Pathway or Brite
09191 Unclassified: metabolism
99980 Enzymes with EC numbers
RGna_08435
Enzymes [BR:
rgn01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.24 rhamnogalacturonan exolyase
RGna_08435
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RGL11_C
RGI_lyase
Lipase_GDSL
Lipase_GDSL_2
FG-GAP
FG-GAP_3
ALGX
Motif
Other DBs
NCBI-ProteinID:
QHB25238
LinkDB
All DBs
Position
complement(1643826..1646951)
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AA seq
1041 aa
AA seq
DB search
MMELAQITRNEAVIMWDEAIGAQSYRIYWSDREGEQVRYQMIGEIPADQERVYRLKKSTH
RPHYLKLVPVIDGKETAEELFVTPVHYIQKEQLEQLKRGLIAVPCREGVFLSWRLFLTEV
TGVREDGRGLDGVGFVIYRNGESIAEVNDSMNYLDIQGGMDDQYSVAPVINGNILSRCEC
VNVWENGYYDIPIQKPADGITPAGEAFTYSANDMSVADVDGDGEYEYIVKWDPSNSHDVS
IKGYTGHCYLDCYKLDGELMWRLDMGENIRAGAHYTQFICYDFNGDGQAEMAVKTAPGTK
MTIFFEGKEKEQYITIPEKDMCAGITHEDSYVCSAEDYYEHLVKVFQSWHEQPEVISGTW
PSTLEECFGTEQRFEYPLSEQDARQLTDYFIDVYAKERSDKNCLREFEGFIYEGPEYLTM
FAGNGEELETIEFPVGRTDDGLRWGDYAMKRIEPCNRVDRFLSGVAYLDGERPYLIVCRG
YYTRSTLTAYRFFENKFETEWKVDSGFVPMNNPFHDNPHLKKGEDPVYGKLAGQGNHSLA
TADVDGDGCMEIIYGAACIDHDGSLLYSSYGMLPDGREAKFGHGDAMHVADIDPDRPGLE
IFNVFEEGINAPYGYALRHAENGEVVFGEYAEEDLGRCMIGDIHPNARGLQCWVNGKGTY
DCHGTLLEAGSPGSNMSIRWASDLTTQITDGEDYLHETATGVISDMIHGEMLRPENTLTN
NGTKGNPCLVADIFGDFREEILLRTSDSSAIRIYSSTELTEHKLFTLMHDVQYRCGVAWQ
NNCYNQPGYTKFYYASDMDFRQVLPEMKRKPVLYLAGDSTAQSYHESERPQTGWGEKLVD
ALEAENCWKEAHRDSSPFSQEMSYETRHIIVDNCAMAGRSSRSFREEGRLEDIKNQMKSG
DYLLIQFGHNDAAAEKKERYVPLETFGESLMEYIRVAREKKAYPILISSICLRPCLANEQ
GENAKIDALLPKYAKEMKKLADKENIPYVDMLGITRKACAKAGEEQTAVWYREDNVHLQE
AGAQLYAHFVAEEIKKLIGKE
NT seq
3126 nt
NT seq
+upstream
nt +downstream
nt
atgatggaattagcacagatcacccgcaacgaggcagtaatcatgtgggatgaagctatt
ggcgcacaaagctacagaatttactggtctgaccgtgagggagagcaagtaaggtatcag
atgataggggaaattccggcagatcaagagagggtttatcgattgaaaaaatcaacgcac
cggccgcattatctaaaactggttccggtgatagatggaaaagaaacggcagaggagctg
ttcgtgacaccggttcattatattcagaaggaacaactggagcaactgaagcgcggtctg
atcgcagtgccgtgcagggaaggtgttttcttaagctggcgattgttccttacagaggtg
accggagtaagagaagatggaagagggcttgacggcgtcggatttgttatttatagaaac
ggagaaagcatcgctgaggtgaatgacagtatgaattatctggatattcaaggtggtatg
gatgatcagtatagtgtggcacctgtcataaatggaaacatcttatccaggtgtgagtgt
gtaaatgtttgggaaaatgggtattatgatattcctattcagaaaccggcagacggaatt
accccggcaggagaagcatttacatattcagcaaacgatatgtctgtggcggatgtagac
ggcgatggagagtatgagtatattgtgaaatgggatccgtccaactcccatgatgtctcg
atcaaaggatataccggtcactgctatctggattgttataaattggatggagaattgatg
tggcgcctggacatgggagaaaatatacgagccggtgctcattatacccagtttatctgt
tatgactttaatggagatggacaggcggagatggcagtgaaaacggcaccgggtacgaaa
atgacgattttcttcgaaggcaaagaaaaagaacaatatatcacaataccagaaaaagat
atgtgtgcgggaatcacgcatgaagattcatatgtttgttcggccgaagattattatgaa
catctggtaaaggtattccaaagctggcatgagcagccggaagttatcagtggtacatgg
ccgtctacactagaagaatgttttgggacagagcaaagatttgagtatccgctgtcagag
caggatgcgcgtcaattgacggattattttattgatgtgtatgcgaaagaaagaagtgat
aaaaattgcttgagagagtttgaaggcttcatatatgaaggcccggagtatttgacgatg
tttgccgggaatggcgaggaactggaaacaatagagtttcctgtcgggcgtactgatgat
ggtctgcgatggggagattatgcaatgaaacgaatcgaaccgtgtaaccgtgtggatcga
ttcctgtcgggagtggcctatctggatggagaacgtccgtatctgattgtatgccgtggc
tattacacaagatcaacactgacggcatatcgtttctttgaaaacaaatttgagacggag
tggaaggtagacagtgggtttgttccaatgaacaatccatttcatgataatccgcatctg
aaaaaaggagaggatccggtgtacggtaaacttgcgggacagggaaatcattcgcttgca
acagcagatgtagatggggacggctgtatggaaatcatttacggagcagcatgtatcgat
catgacggaagtttattatacagttcttatggaatgctgccagacggaagagaagctaag
tttggacacggagatgccatgcatgtggcagatatcgatccggatcgtccggggctggag
atttttaatgtttttgaagaagggattaacgctccatacgggtatgccctgcgtcatgcg
gaaaatggagaagttgtgtttggagaatatgcggaggaagatctgggaagatgcatgatt
ggagatattcatcccaatgcaagggggctacagtgctgggtgaacggaaaagggacatat
gactgtcacggaactcttttggaggcaggttcgccgggcagcaatatgtcgattcgctgg
gcatcagatctgacgacacagattacggacggcgaggattatcttcatgaaactgcaaca
ggagtgatcagtgatatgatacacggcgagatgctccgtccggagaatacgctgacaaat
aacggtaccaaaggaaatccatgtcttgtggctgatatcttcggggatttccgggaggag
atccttctgcggacaagcgacagttccgcaatccgaatttatagttcaacggaattgacg
gaacataaattgtttactttgatgcatgatgtgcagtatcggtgtggagtggcatggcag
aataactgctataaccagccggggtatacgaagttttattatgcttcggatatggatttc
aggcaggtactgccggagatgaaacgtaagccggtattgtatcttgcaggagattcgacg
gcacagagttatcatgagtcagaaagaccacagaccggatggggagaaaagcttgttgac
gccctggaagccgaaaactgttggaaagaagcgcatcgggacagcagtccgttttcgcag
gaaatgagctatgaaaccagacatattatcgttgacaattgtgcgatggcaggtcgatcc
tccagatcttttagagaagaaggtcgacttgaggacatcaaaaatcagatgaagagtgga
gattatctgttgatacagttcggacataatgatgcggcagcagagaaaaaagaacgctat
gttccgctggaaacatttggagaatctcttatggaatatataagagtggcaagagaaaag
aaggcgtatccgattctgatttcgtcaatctgtctgcgtccgtgtctggcaaatgaacag
ggagaaaacgcaaaaatcgatgcattacttccgaaatatgcaaaagaaatgaagaagctt
gcagataaagaaaatattccatatgtggatatgctggggattacaagaaaagcatgtgca
aaggcaggagaagaacaaactgctgtatggtatcgtgaagacaacgtccatctacaagag
gcaggagcacaactgtatgcgcattttgtagcagaagaaatcaaaaagttaatcggaaag
gaataa
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