Mediterraneibacter gnavus: RGna_10145
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Entry
RGna_10145 CDS
T06719
Name
(GenBank) HD domain-containing protein
KO
K03698
3'-5' exoribonuclease [EC:3.1.-.-]
Organism
rgn
Mediterraneibacter gnavus
Brite
KEGG Orthology (KO) [BR:
rgn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rgn03019
]
RGna_10145
Messenger RNA biogenesis [BR:
rgn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
RGna_10145
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HD
tRNA_anti-codon
Cas3_HD
TraI_2
HDOD
Motif
Other DBs
NCBI-ProteinID:
QHB23818
LinkDB
All DBs
Position
complement(2011931..2012872)
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AA seq
313 aa
AA seq
DB search
MRYIKDLHEGETIRNVYLCKGKRSAETRNGKPYDNLILQDKTGTLDGKVWDPNSQGIAEY
DEKDFIEVFGDVTSYNGSLQMNIRQIRKAEEGEYNPADYMPTSEKSVDSMYEELLGFIRG
ISNTWLRQLLEYYFVKDEEFIRVFKGHSAAKTVHHGFAGGLLEHTLSVVKMCRYFADTYE
ILNRDLLYTAAMCHDIGKTKELSAFPDNDYTDDGQLLGHIIIGVEMMNDAIREIPGFPEK
LGSELKHCIISHHGELEYGSPKKPALAEAMALNLADNADAKMQTLTEIFKNKPGNDWLGY
NRMFETNLRRSSI
NT seq
942 nt
NT seq
+upstream
nt +downstream
nt
atgagatatatcaaggatttacatgaaggcgagacaatcaggaatgtatacctgtgtaaa
ggaaaacgttccgcggagacaagaaacggaaagccttatgacaatctgattttacaggat
aagacgggaacactggatggaaaagtatgggatccgaattctcaggggatcgcagagtat
gatgagaaggatttcatcgaagtatttggtgatgtgacaagttataacggaagtctgcag
atgaacatccgtcagatcagaaaagcagaagagggtgaatacaatccggcggattatatg
ccgacttctgagaagagtgtggacagtatgtatgaagagctgctcggatttatccgtgga
atttccaacacgtggctgcgtcagctgctggaatattattttgtgaaagatgaggaattt
atccgcgtgtttaaaggacattctgcggcaaaaacagttcatcacggatttgcaggagga
cttctggagcatacgttaagtgttgtgaagatgtgtcggtattttgcggacacctatgaa
atcttgaacagagatcttctttatacggcggcaatgtgccacgatattggaaagacaaaa
gagctttctgcatttccggataatgattatacggatgacggacagcttctggggcacatc
atcattggtgttgagatgatgaatgatgcgataagagagattccgggatttccggaaaag
ctgggaagtgaattgaagcattgtattatttcccatcacggggagctggagtatggttct
ccgaaaaaaccggccctcgcagaggcgatggcattgaatctggcagataatgcagatgcc
aagatgcagactctgacggagatctttaaaaataaaccgggaaatgactggctgggttac
aaccggatgtttgagacaaacctgagaagaagttccatttag
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