Mediterraneibacter gnavus: RGna_13585
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Entry
RGna_13585 CDS
T06719
Name
(GenBank) ATP-dependent RNA helicase DbpA
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
rgn
Mediterraneibacter gnavus
Pathway
rgn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rgn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RGna_13585
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rgn03019
]
RGna_13585
03009 Ribosome biogenesis [BR:
rgn03009
]
RGna_13585
Enzymes [BR:
rgn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
RGna_13585
Messenger RNA biogenesis [BR:
rgn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
RGna_13585
Ribosome biogenesis [BR:
rgn03009
]
Prokaryotic type
rRNA helicases
RGna_13585
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
AAA_19
CMS1
AAA_30
Hyccin
Flavi_DEAD
SelB_WHD3
Motif
Other DBs
NCBI-ProteinID:
QHB24406
LinkDB
All DBs
Position
2721844..2723427
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AA seq
527 aa
AA seq
DB search
MEELKFEELELCPEILKAVKHMGFEEASPIQSKAIPVIMSGKDVIGQAQTGTGKTAAFGI
PLLEKIDPKNKKLQAIVLCPTRELAIQVAEEIRNLAKYMHGIKVLPIYGGQEIVKQIRSL
KSGTQLVIGTPGRVMDHMRRKTMKMDHVHTIVLDEADEMLNMGFREDIETILEGIPQEHQ
TVLFSATMPKAILEITKQFQTNAELVKVTKKELTVPNIEQFYYEVKPKNKEEVLSRLLDI
YTPKLSVVFCNTKKQVDLLVNGLLGRGYFAAGLHGDMKQAQRDRVMQGFRSGKTDILVCT
DVAARGIDVDDVEAVFNYDLPQDDEYYVHRIGRTGRAGRVGRSFSFVSGREVYKLKEIQR
YCKTKIYAQKVPSLNDVANTKMENVLEEIEQIIENEDLTKFLQIIEERVNESDYTAMDLA
AAFLKYCSGQQETEEKDMEFGDTGAEEAGMVRLFINIGKKNKAKPGDIVGAIAGESGIPG
KLIGTIDMFDKYTFVEVPREYARDVLNAMNHTKIKGKSVAVEPANQK
NT seq
1584 nt
NT seq
+upstream
nt +downstream
nt
atggaagaattaaaatttgaagagttagagttgtgtcctgaaatattaaaagcagtaaaa
catatgggatttgaagaggcatcaccgattcagtccaaagcgattcctgtgatcatgagc
ggaaaagatgtgatcggacaggcgcagacaggaaccggaaaaacagcagcctttggaatc
ccgcttctggaaaagattgatccgaagaataaaaaacttcaggcgattgttctttgcccg
acaagagagctggcaatccaggttgcagaagaaatcagaaatcttgcaaaatatatgcat
gggataaaagttctgccaatctatggaggacaggagattgtaaaacagattcgttctctg
aaaagcggcacacagcttgtgatcggaacaccgggacgtgtgatggatcatatgcgccgc
aaaactatgaaaatggatcatgtgcatacgatcgtgctggatgaggcggatgagatgctc
aacatgggattccgtgaggatattgagacaattttggaaggaattccacaggaacaccag
acagtgcttttttctgcgacaatgccaaaggcaatcttagagatcacaaaacagttccag
acaaatgcggaactggtgaaggtgacgaagaaagagctgaccgttccgaacattgaacag
ttttactatgaagtgaaaccgaagaataaagaggaagtgctttcccgtcttctggatatt
tatacaccgaaactctccgttgtattttgtaatacgaagaaacaggtagatctgcttgtg
aatggactgcttggaagaggatattttgcggcaggacttcatggagacatgaagcaggca
cagagagaccgtgtgatgcagggattccgttccggaaagacagatattcttgtgtgtaca
gacgtagcagcaagaggaatcgatgtggatgatgtggaagcggtatttaactatgatctt
ccgcaggatgatgaatattatgtgcaccgtatcggaagaaccggacgtgccggacgcgtg
ggacgttcgttctcttttgtttccggaagagaagtttataagctgaaagagattcagcgt
tactgcaagacgaaaatttatgcacagaaagtaccgtctttaaacgatgttgcaaataca
aagatggaaaatgtgctggaagagattgaacagatcattgaaaatgaagatctgacaaaa
ttccttcagatcattgaagaacgtgtcaatgaatctgattatactgcaatggatctggca
gcagcatttttaaaatactgttccggacagcaggagacagaagaaaaagatatggaattt
ggtgataccggggcagaagaagccggaatggttcgtctatttattaatatcggtaagaaa
aacaaagcaaaaccgggagatatcgtgggcgcaattgccggtgaaagcggaattccggga
aaactgatcggaacgatcgatatgtttgataagtatacatttgtagaagttccgagagaa
tatgcacgagatgtactcaatgcaatgaatcatacgaaaatcaaaggaaaatctgttgcg
gtagagccggcaaatcagaaataa
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