KEGG   Mediterraneibacter gnavus: RGna_13585
Entry
RGna_13585        CDS       T06719                                 
Name
(GenBank) ATP-dependent RNA helicase DbpA
  KO
K05592  ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
Organism
rgn  Mediterraneibacter gnavus
Pathway
rgn03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:rgn00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    RGna_13585
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:rgn03019]
    RGna_13585
   03009 Ribosome biogenesis [BR:rgn03009]
    RGna_13585
Enzymes [BR:rgn01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     RGna_13585
Messenger RNA biogenesis [BR:rgn03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     RGna_13585
Ribosome biogenesis [BR:rgn03009]
 Prokaryotic type
  rRNA helicases
   RGna_13585
SSDB
Motif
Pfam: DEAD Helicase_C DbpA ResIII AAA_19 CMS1 AAA_30 Hyccin Flavi_DEAD SelB_WHD3
Other DBs
NCBI-ProteinID: QHB24406
LinkDB
Position
2721844..2723427
AA seq 527 aa
MEELKFEELELCPEILKAVKHMGFEEASPIQSKAIPVIMSGKDVIGQAQTGTGKTAAFGI
PLLEKIDPKNKKLQAIVLCPTRELAIQVAEEIRNLAKYMHGIKVLPIYGGQEIVKQIRSL
KSGTQLVIGTPGRVMDHMRRKTMKMDHVHTIVLDEADEMLNMGFREDIETILEGIPQEHQ
TVLFSATMPKAILEITKQFQTNAELVKVTKKELTVPNIEQFYYEVKPKNKEEVLSRLLDI
YTPKLSVVFCNTKKQVDLLVNGLLGRGYFAAGLHGDMKQAQRDRVMQGFRSGKTDILVCT
DVAARGIDVDDVEAVFNYDLPQDDEYYVHRIGRTGRAGRVGRSFSFVSGREVYKLKEIQR
YCKTKIYAQKVPSLNDVANTKMENVLEEIEQIIENEDLTKFLQIIEERVNESDYTAMDLA
AAFLKYCSGQQETEEKDMEFGDTGAEEAGMVRLFINIGKKNKAKPGDIVGAIAGESGIPG
KLIGTIDMFDKYTFVEVPREYARDVLNAMNHTKIKGKSVAVEPANQK
NT seq 1584 nt   +upstreamnt  +downstreamnt
atggaagaattaaaatttgaagagttagagttgtgtcctgaaatattaaaagcagtaaaa
catatgggatttgaagaggcatcaccgattcagtccaaagcgattcctgtgatcatgagc
ggaaaagatgtgatcggacaggcgcagacaggaaccggaaaaacagcagcctttggaatc
ccgcttctggaaaagattgatccgaagaataaaaaacttcaggcgattgttctttgcccg
acaagagagctggcaatccaggttgcagaagaaatcagaaatcttgcaaaatatatgcat
gggataaaagttctgccaatctatggaggacaggagattgtaaaacagattcgttctctg
aaaagcggcacacagcttgtgatcggaacaccgggacgtgtgatggatcatatgcgccgc
aaaactatgaaaatggatcatgtgcatacgatcgtgctggatgaggcggatgagatgctc
aacatgggattccgtgaggatattgagacaattttggaaggaattccacaggaacaccag
acagtgcttttttctgcgacaatgccaaaggcaatcttagagatcacaaaacagttccag
acaaatgcggaactggtgaaggtgacgaagaaagagctgaccgttccgaacattgaacag
ttttactatgaagtgaaaccgaagaataaagaggaagtgctttcccgtcttctggatatt
tatacaccgaaactctccgttgtattttgtaatacgaagaaacaggtagatctgcttgtg
aatggactgcttggaagaggatattttgcggcaggacttcatggagacatgaagcaggca
cagagagaccgtgtgatgcagggattccgttccggaaagacagatattcttgtgtgtaca
gacgtagcagcaagaggaatcgatgtggatgatgtggaagcggtatttaactatgatctt
ccgcaggatgatgaatattatgtgcaccgtatcggaagaaccggacgtgccggacgcgtg
ggacgttcgttctcttttgtttccggaagagaagtttataagctgaaagagattcagcgt
tactgcaagacgaaaatttatgcacagaaagtaccgtctttaaacgatgttgcaaataca
aagatggaaaatgtgctggaagagattgaacagatcattgaaaatgaagatctgacaaaa
ttccttcagatcattgaagaacgtgtcaatgaatctgattatactgcaatggatctggca
gcagcatttttaaaatactgttccggacagcaggagacagaagaaaaagatatggaattt
ggtgataccggggcagaagaagccggaatggttcgtctatttattaatatcggtaagaaa
aacaaagcaaaaccgggagatatcgtgggcgcaattgccggtgaaagcggaattccggga
aaactgatcggaacgatcgatatgtttgataagtatacatttgtagaagttccgagagaa
tatgcacgagatgtactcaatgcaatgaatcatacgaaaatcaaaggaaaatctgttgcg
gtagagccggcaaatcagaaataa

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