Mediterraneibacter gnavus: RGna_16540
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Entry
RGna_16540 CDS
T06719
Symbol
pcrA
Name
(GenBank) DNA helicase PcrA
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
rgn
Mediterraneibacter gnavus
Pathway
rgn03420
Nucleotide excision repair
rgn03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rgn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
RGna_16540 (pcrA)
03430 Mismatch repair
RGna_16540 (pcrA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rgn03400
]
RGna_16540 (pcrA)
Enzymes [BR:
rgn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
RGna_16540 (pcrA)
DNA repair and recombination proteins [BR:
rgn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
RGna_16540 (pcrA)
MMR (mismatch excision repair)
Other MMR factors
RGna_16540 (pcrA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PcrA_UvrD_tudor
UvrD_C_2
AAA_30
Viral_helicase1
AAA_11
ResIII
Motif
Other DBs
NCBI-ProteinID:
QHB24933
LinkDB
All DBs
Position
3293531..3295765
Genome browser
AA seq
744 aa
AA seq
DB search
MSIYDTLNEQQREAVYCTDGPLLILAGAGSGKTRVLTHRIAYLIEEKGVNPWNILAITFT
NKAAGEMRERVDNLVGFGSESIWVSTFHSTCVRILRRHIDRLGYDTNFTIYDTDDQKTLM
KDVCKLVEIDTKVYKERNLLAAISSAKNEMISAQEYALNAQGDFGKEKIAKVYQEYEKQM
HANNALDFDDLLVKTVQLFETQPDVLENYQERFRYIMVDEYQDTNTVQFQLVSLLAGKYR
DLCVVGDDDQSIYKFRGANIKNILNFEQEFPDATVIKLEQNYRSTGNILDAANAVISNNV
GRKDKQLWTDNGEGEKIKFCQFDTGYDEAEYIADDIEREVRNGASYNDHAILYRTNAQSR
LFEERFVAQNIPYKIVGGVNFYARREIKDVLAYLKTIDNGKDDLAVRRIINVPKRGIGLT
TINRIQESAASRGIGFYDALLGLDLIPGVARGAAKLEGFVALIEYFKGVAETLSLSDLLQ
EVIDKTGYIESLEAEGKEESETRIENIDELRSKVAVYEESCLDQDEKPTLSGFLEEVALV
ADIDSLDEEQDYVVLMTLHSAKGLEFPHVYLAGMEDGLFPSYMTVTSDDREDMEEERRLC
YVGITRAEQKLTMTSAMRRMVRGETQYNKVSRFMKEIPLELLDNGNRSSKMFEERQEIPK
QTAYTQAKQTFKAKAFSAAAPKQFAVSKEKGLDYGVGDRVRHMKFGEGTVTQITEGGRDF
EVTVEFDTAGVKKMFAGFARLVKL
NT seq
2235 nt
NT seq
+upstream
nt +downstream
nt
atgagcatttatgatacactgaacgaacagcagagggaggcggtctactgcacggatggt
ccgcttctgatccttgcgggagcgggatcgggaaagacgagagtgctgacgcacaggatt
gcatatttaatagaagaaaagggggtgaatccatggaatatcctggcgatcacgtttacg
aacaaggcggccggggagatgcgggagcgtgtggataatctggtgggatttggatcagag
agtatctgggtgagcacgtttcactcgacttgtgtacggattttgagaagacatattgac
cgcctggggtatgatacgaattttacaatctacgatacggatgatcagaagacattgatg
aaagatgtctgtaagctggtggagatcgatacgaaagtatataaggagagaaatctttta
gcggcgatttcctcagcaaaaaatgagatgatttccgcacaggagtatgcgctgaatgcg
cagggggactttggaaaagagaagatcgccaaggtatatcaggagtatgaaaagcagatg
catgccaataatgcactggattttgacgacctgctcgtgaagacggtgcaactgtttgag
actcagccggatgtgctggagaattatcaggagcggtttcgttatattatggtggatgag
tatcaggatacaaataccgtgcagttccagctggtgagtctgctggcgggcaaatacaga
gatctctgtgtggtcggtgatgatgatcagtccatttataaattccggggagccaatatt
aaaaatattttgaattttgaacaggaatttcccgatgcgacagtcatcaaactggagcag
aattatcgttctacaggcaatatcctggatgctgcaaatgcagtgatcagcaacaatgtg
ggtagaaaggacaagcagctttggacagataatggagaaggagagaagattaagttctgc
cagtttgataccggatatgatgaagcagaatatattgcagatgacattgaaagggaagtc
agaaacggggcatcttacaatgatcatgcgattttataccggactaacgcgcagtcccgt
ctgtttgaggaacggtttgtggcacagaatattccatataagattgtcggcggtgtgaat
ttctatgcgagaagagaaatcaaggatgtgcttgcatatctgaagaccatcgacaatgga
aaagatgatctggcagtcagaaggatcatcaatgtaccgaagcgaggcattggcctgact
acgatcaatcgaattcaggagtcagcggcgtccagaggaatcggattctatgatgctctt
ttagggctggatctgataccgggggtggcaagaggtgctgcaaagctggaaggatttgtg
gcattgatcgagtactttaagggagtggcagaaaccttaagtctgtcggatcttttgcag
gaagtaatcgataagacgggatacatagagagtctggaagcagaaggaaaagaagagtca
gagacaagaattgaaaatatcgacgagcttcgaagcaaggttgcggtttatgaagaatcc
tgtctggatcaggatgaaaaaccgacacttagcggatttttggaagaagtcgcattggtg
gcagacattgacagtctggatgaggaacaggattatgtagttttaatgacactgcacagt
gcaaaaggtctggaatttccacatgtgtatctggcaggaatggaagacggactgtttcca
agttatatgacagttacatcagatgacagggaggatatggaagaagagcggcgcctctgc
tatgtgggaatcacaagagcagagcagaagttgaccatgaccagtgctatgcggcggatg
gtgcggggagagacacagtacaataaagtgtcccggtttatgaaagaaattccattggaa
ctgcttgacaatggcaaccgttcttcgaaaatgtttgaagaaagacaggagattccgaaa
cagactgcgtatacgcaggcaaaacagacctttaaggcaaaggcattttctgcggctgcg
ccaaaacagtttgcagtcagcaaagaaaaggggctggattatggtgtgggtgaccgtgtc
cggcacatgaaatttggagaaggaaccgtgacacagattacggaaggcggcagagatttt
gaggtaaccgtagagtttgacaccgccggagtgaaaaaaatgtttgccggatttgcccgt
ttggtaaaattatag
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