Mediterraneibacter gnavus: RGna_16550
Help
Entry
RGna_16550 CDS
T06719
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
rgn
Mediterraneibacter gnavus
Brite
KEGG Orthology (KO) [BR:
rgn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
rgn03009
]
RGna_16550
Enzymes [BR:
rgn01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
RGna_16550
Ribosome biogenesis [BR:
rgn03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
RGna_16550
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
Methyltransf_25
MTS
Methyltransf_15
Cons_hypoth95
N6_N4_Mtase
Methyltransf_11
PCMT
PrmA
Methyltransf_12
Methyltransf_32
UPF0020
Methyltransf_4
FtsJ
Ubie_methyltran
Methyltransf_23
2-ph_phosp
Motif
Other DBs
NCBI-ProteinID:
QHB24935
LinkDB
All DBs
Position
3296220..3297899
Genome browser
AA seq
559 aa
AA seq
DB search
MKKGQVLEGTIEKVEFPNKGVVTVAEEGKSVIVKNGIPGQKVKFCVNKFKRGNAEGRLLE
VLEKSPLETRKPVCSIFPVCGGCMYQTMSYEAQMDMKAEQVKNILNEAVNGEYLFEGVKA
SPKEFAYRNKMEFSFGDEYKDGPLTLGLHKKGSTYDVLTASDCKLVHDDMTKILNCVLEY
FKERNVSYYKKMQHTGYLRHLLLRRGDRTGEILVNLVTTTQEEHDMSPLKEALLNLELEG
KIVGFLHILNDSLSDVVQSDETRIIYGQDYFYEKLLNLEFKITPFSFFQPNSRGAEVLYS
TVRDYIGDINDMTVFDLFSGTGTIAQVLAPVAKQVIGVEIIEEAVEAAKENAAHNGLSNC
KFIAGDVFKVLDEIEEKPDVIVLDPPRDGIHPKALPKILDYGVDKIVYISCKVTSLARDL
EMIQARGYEVVKSVAVDQFCQTVHVETVVLLSHKKPDGHINVKVEFGEGEGKVPLDNIAK
RAESYKPKERVTYKMIKEYIEAKYGFKVHTAYIAEVKRDLGLPMYDAPNAVEELKQPRKH
PTAEKVEAIKDALKHFEVI
NT seq
1680 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaaaggacaagtattagaaggaacgatagaaaaagtggagtttcccaataaagga
gttgtcacagttgcagaagaaggcaaatctgtgatcgtaaagaacgggattccgggacag
aaggtaaaattctgtgtgaataagtttaagcgaggaaatgcagaggggcgcctgttggaa
gtgctggagaaatctccgctggaaacaagaaaaccggtgtgcagcattttcccggtatgc
ggagggtgtatgtaccagaccatgtcttatgaagcacagatggacatgaaggcagaacag
gtgaaaaacattctgaatgaagcagtgaacggtgaatatctttttgaaggagtgaaggca
agtccgaaagaatttgcataccgcaataagatggagttctcgttcggcgacgagtataag
gacgggcctctgacattgggactgcataaaaaaggcagcacgtatgatgtgctgacagcg
tcagactgcaagctggtacatgatgacatgacaaaaatcttaaattgtgtgctggaatat
tttaaggagcgaaatgtcagctattataagaaaatgcagcatacaggctatctgcgtcat
ttgctgcttcggagaggtgaccgcacaggagaaatcctggtcaatctggttacaactaca
caggaagaacacgatatgtctccattaaaagaggcactccttaatttggaactggaaggg
aaaatcgtgggatttcttcatattttaaatgattctctttctgatgtggttcagagtgat
gagaccagaatcatttacgggcaggactatttttatgagaagctgttgaatttggaattc
aagatcacgccgttttctttctttcaaccaaattcaagaggggcggaagtgctttacagt
acagttcgtgattatatcggagatatcaacgatatgacagtgttcgatttgttcagcgga
actgggacgatcgcgcaggtgctggcgccggtggcaaaacaggtgatcggtgtggagatt
atcgaggaagctgtggaggcagccaaagaaaatgctgcacacaacggactttccaactgt
aaatttattgccggggacgtatttaaagtgttggatgagattgaggaaaaaccggatgtg
atcgtcctggatccgccaagagacgggattcatccaaaggctttgccgaaaatcctggat
tacggagtggacaagattgtctacatttcctgtaaagtgaccagtctggcacgggatctg
gagatgatacaggcaagaggatatgaggttgtgaagagtgtggcggtggatcagttttgt
cagacggtgcatgtggagacggtagtactgctttcccacaaaaagccagacggacatatc
aacgtaaaagttgagtttggtgagggtgagggaaaagttccgcttgataatatcgctaaa
agagcggaaagctacaagcccaaagagcgagtgacctacaaaatgataaaggagtacata
gaagctaaatacggtttcaaagtacataccgcatatatcgcagaggtaaagagagattta
ggcctgccaatgtacgatgctcctaatgcggtagaagaattgaaacagccgaggaagcat
ccgacggcggagaaggtggaagcgataaaggatgcgttgaagcattttgaagtgatttaa
DBGET
integrated database retrieval system
