Mediterraneibacter gnavus: RGna_17560
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Entry
RGna_17560 CDS
T06719
Symbol
rfbB
Name
(GenBank) dTDP-glucose 4,6-dehydratase
KO
K01710
dTDP-glucose 4,6-dehydratase [EC:
4.2.1.46
]
Organism
rgn
Mediterraneibacter gnavus
Pathway
rgn00521
Streptomycin biosynthesis
rgn00523
Polyketide sugar unit biosynthesis
rgn00525
Acarbose and validamycin biosynthesis
rgn00541
Biosynthesis of various nucleotide sugars
rgn01055
Biosynthesis of vancomycin group antibiotics
rgn01100
Metabolic pathways
rgn01110
Biosynthesis of secondary metabolites
rgn01250
Biosynthesis of nucleotide sugars
Module
rgn_M00793
dTDP-L-Rha biosynthesis, Glc-1P => dTDP-L-Rha
Brite
KEGG Orthology (KO) [BR:
rgn00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00541 Biosynthesis of various nucleotide sugars
RGna_17560 (rfbB)
09109 Metabolism of terpenoids and polyketides
00523 Polyketide sugar unit biosynthesis
RGna_17560 (rfbB)
01055 Biosynthesis of vancomycin group antibiotics
RGna_17560 (rfbB)
09110 Biosynthesis of other secondary metabolites
00521 Streptomycin biosynthesis
RGna_17560 (rfbB)
00525 Acarbose and validamycin biosynthesis
RGna_17560 (rfbB)
Enzymes [BR:
rgn01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.1 Hydro-lyases
4.2.1.46 dTDP-glucose 4,6-dehydratase
RGna_17560 (rfbB)
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Motif
Pfam:
GDP_Man_Dehyd
Epimerase
3Beta_HSD
Polysacc_synt_2
RmlD_sub_bind
NAD_binding_4
KR
adh_short
RIH_assoc
NAD_binding_10
Motif
Other DBs
NCBI-ProteinID:
QHB25111
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Position
3508749..3509825
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AA seq
358 aa
AA seq
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MRTYLVTGGAGFIGSNYIHYMFKKYDNEIRIINVDKLTYAGNLENLKDIEDRENYTFVKA
DICDADAINKIFEENEIDRVVHFAAESHVDRSIKNPDVFVKTNVLGTLVMLNAAKAAWEL
PDGTFKEGKKFLHVSTDEVYGSLEEEGEYFYETTPYDPHSPYSASKASSDMLVKSYMDTY
KFPANITNCSNNYGPYQFPEKLIPLIINNALQGKNLPVYGDGKNVRDWLYVEDHAKGIDM
VQEKGRLFETYNIGGHNEKQNIQIIHIILDTLQEMLPEGDPRKELVSEKLITYVEDRKGH
DRRYAIAPDKIKEEVGWYPETMFEDGIRLTIKWFFENEEWMKNVTSGDYQKYYEEMYK
NT seq
1077 nt
NT seq
+upstream
nt +downstream
nt
atgagaacatatttagtaaccggtggagccgggtttattggatcaaactatattcattac
atgtttaaaaagtatgacaacgaaatccgcatcatcaatgtagataagctgacatatgca
ggaaatcttgagaacctgaaagatatagaagacagagaaaattacacatttgtaaaggca
gatatctgtgatgcagatgcgattaacaagatttttgaagagaacgagattgacagagta
gtacattttgctgcagagagtcatgttgatcgaagcattaaaaatccggatgtatttgta
aagacaaatgtactcgggacacttgtgatgctcaatgcggcaaaagcagcatgggagctt
cctgacggaacatttaaggagggcaagaaattccttcatgtttctacagatgaggtgtat
ggatcactggaagaagagggagaatatttctatgagacaactccgtacgatccgcacagc
ccatactctgcaagtaaagcatcatcggatatgctggtaaaatcttatatggatacgtat
aaatttccggcaaatatcacaaactgtagcaataactatggcccgtatcagtttccggag
aagttgattccgctgatcattaacaatgctctgcagggcaagaatcttccggtatacgga
gacggaaagaatgtcagagactggctgtatgtagaagaccatgcaaaaggaattgacatg
gttcaggaaaaaggaagactttttgagacgtataatattggcggtcataatgaaaaacag
aatattcagattatccacattattctggatacattacaggagatgttgccagagggagat
ccaagaaaagaacttgtcagtgaaaagctgatcacatatgtggaagatagaaaaggacat
gacagacgttatgctattgcgccggataagatcaaagaagaagtgggctggtatccggaa
acaatgtttgaagacggtattcgcttgacgatcaaatggttctttgagaatgaggaatgg
atgaagaatgttacaagcggtgactatcagaaatattacgaagaaatgtataaataa
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