Rhodococcus globerulus: KYT97_00250
Help
Entry
KYT97_00250 CDS
T07544
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
rgo
Rhodococcus globerulus
Brite
KEGG Orthology (KO) [BR:
rgo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
rgo03016
]
KYT97_00250
Enzymes [BR:
rgo01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
KYT97_00250
Transfer RNA biogenesis [BR:
rgo03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
KYT97_00250
Prokaryotic type
tRNA splicing ligases
KYT97_00250
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
DUF1601
Motif
Other DBs
NCBI-ProteinID:
QXW02604
LinkDB
All DBs
Position
complement(53254..54435)
Genome browser
AA seq
393 aa
AA seq
DB search
MEKITERLWNWASILDEKTREQALRTSQMPFVRPHLALMPDAHLGAGATVGSVIPTEGAI
MPAAVGVDIGCGMIAVKTQYNAQDLTGRDLSALRHSIERSVPLSAGVYNKTLTATAQTRI
AELEAMAGDRLPFYDKFKNNWRFQLGTLGSGNHFIEVTLDENDNVWLFLHSGSRGVGNKI
AQHHIKVAQDLCARWHIDLPDRDLAYLVEKTPEFDCYITDLNWAQHFALLNREEMMDRVV
KDFAYFMGDGVPAVVEELERINCHHNFTQKEFHMGRGVWLSRKGAIKADVGVPGLIPGSM
GTASYVVVGKGNVPSFKSSPHGAGRVYARNKARRTFTIDDLDKAMVGIEYKRSKAFLDEI
PGAYKDIDVVMDDAKDLVEIRHTLRQIVNVKGD
NT seq
1182 nt
NT seq
+upstream
nt +downstream
nt
atggagaagatcaccgaaaggctgtggaactgggcatcgatactcgacgagaaaactcgc
gagcaagcgttgcgcacgtcccagatgccttttgtccgtccacatctggcattgatgcct
gatgcgcacctcggtgcgggtgcgacggtgggttcggtcatcccgacggaaggcgcgatc
atgcctgccgccgtcggcgtggatatcggttgcggaatgatcgcagtcaaaacccagtac
aacgctcaggacctgaccggtcgcgatctgagcgcacttcgccacagcatcgaacgctcg
gtccccctgtctgccggtgtctacaacaaaacactgaccgcgacggcgcaaacccgtatc
gcagagctcgaggcgatggccggcgatcgcctgcccttctacgacaagttcaagaacaac
tggcgtttccagctgggaacgctggggtcgggcaatcacttcatcgaggtcaccctcgac
gaaaatgacaacgtgtggctgttcctgcactcgggtagccgcggtgtcggcaacaagatc
gcacagcaccacatcaaggtcgcgcaggatctgtgcgcccgttggcacatcgacctcccc
gaccgggatcttgcctacctggtcgagaagacacccgaattcgactgctacatcactgat
ctgaactgggcgcagcattttgctctgctgaaccgggaggaaatgatggatcgggtagtg
aaggacttcgcgtacttcatgggcgacggcgttccggctgtcgtggaggaactcgagagg
atcaactgccaccacaacttcacccagaaggaattccacatgggtcgcggtgtgtggttg
agcaggaagggggcgatcaaggccgacgtgggcgtgccaggactcatcccagggtccatg
ggaacggcaagctacgttgtggtcggcaagggcaacgtgccgtcgttcaagtccagcccg
cacggcgccggtcgcgtctacgccaggaacaaggcaaggcggacgttcacgatcgacgat
ctcgacaaggccatggtcggcatcgagtacaagcgttcgaaggcgtttctcgacgaaatt
ccgggagcgtacaaggacatcgacgtcgtgatggacgatgccaaggacttggtggaaatc
cgtcacacgctgcgtcagatcgtcaatgtgaagggcgattga
DBGET
integrated database retrieval system
