Rhodococcus globerulus: KYT97_01440
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Entry
KYT97_01440 CDS
T07544
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
rgo
Rhodococcus globerulus
Brite
KEGG Orthology (KO) [BR:
rgo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rgo03019
]
KYT97_01440 (hrpA)
Enzymes [BR:
rgo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
KYT97_01440 (hrpA)
Messenger RNA biogenesis [BR:
rgo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
KYT97_01440 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_19
AAA_22
HA2_N
nSTAND3
SLFN-g3_helicase
T2SSE
AAA_30
NACHT
AAA_25
TsaE
PhoH
ABC_tran
AAA_16
Motif
Other DBs
NCBI-ProteinID:
QXW02812
LinkDB
All DBs
Position
complement(328219..332124)
Genome browser
AA seq
1301 aa
AA seq
DB search
MSTTPPAPLSPRRSDLKRALSEVSFRDENRLRRKLDRARTPENLATLAQEIESARIRLAE
RAANVPAVSYPEALPVSQRKDDIARAISENQVVIVAGETGSGKTTQIPKICLELGRGVRG
LIGHTQPRRLAARTVAERIAEELDTELGDAVGYTVRFTDQVSDRTYVKLMTDGILLAEIQ
RDKMLRRYDTLIIDEAHERSLNIDFILGYLAQLLPRRPDLKVIITSATIDPERFAQHFAV
DGKPAPIVEVSGRTFPVEMRYRPLTVESGDISYDRDPVDAVCEAVDELSAEGEGDILVFL
SGEREIRDTADALRDRRLRNTEIVPLYARLSAAEQHKVFSPHTGRRVVLATNVAETSLTV
PGIRYVVDPGTARISRYSVRTKVQRLPIEPISQASARQRSGRCGRVAEGICIRLYSEEDF
EARPAFTEPEILRTNLASVILQMTALGLGDIAAFPFVEPPDSRAIKDGIGLLEELGAIAR
GSDASHPELTPIGRELAQIPVDPRMARMLLEAKTNGALHETLVIVAALSIQDVRERPAEF
QQAADEKHARFTVENSDFLAYLKLWDYLREQRNDLSSSQFRKMCRNEFLHWLRIREWQDL
HGQLRQITRGLGWSVNELPASENSVHQSLLAGLLSHIGLREGEKRDYLGARGSRFAIFPG
SGLFKKPPRWVMAAELVETTRLWARMSARIEPEWAEKLAPHLVKRTYSEPHWSSKRGSAM
AYERVTLYGVPLVTGRAVTYSSIDPETSRELFIRHALVQGEWTTQHKFFHENRALLDNVE
ELENRARRRDILVDDETLYEFYDSRVGAEAVSARHFDKWWKTARRQDPNLLTFTPETVVN
SDAATVLGGEYPDAWRQGDMLLPLTYQFEPGKDDDGVTAHIPVGLLAQLQPVGFDWLVPG
MRVELVSALIKTLPKTIRRQVVPAPDYASAALASVKPRSEPLLTAMARELSRLGATHIDA
KDFDPSALPDHLRMTFVVEDESGKVLAKGKDLAQLRRTLAPRVQKEVAKAATGTERAAST
VWTSETLGALEPTITRSIGGQQVTGYPALVPENGGVAVRVLSTPAAQAQAMREGTRALLL
AAVPTQLKAVTSGLSNTHRLMLGQNPDGSLEALVEDCRVAAANEIIAAKGGPVRTPEAFE
ALVKAARSELAGRVSAILRMIVPILEQSHRLNVVLQRSRGEAAEDVREQLKSLLFPGFVA
ELGSARLRELPRYLAAATFRLEALPASAHRDHQAMDVLDRVYAAYDRLLNSLPEERRTAK
DVDAISWMIEELRVGLFAQSLGTPTPVSEKRVLKAIEAIKR
NT seq
3906 nt
NT seq
+upstream
nt +downstream
nt
atgtctacaacaccaccggccccgctctcaccacgacgaagcgacctgaaacgcgccctg
tccgaagtctcattccgtgatgagaaccgtctgcggcgcaaactcgaccgcgcccgcacg
ccggagaacctggcaacactggcccaggagatcgaatccgcgcgcatccggctggccgaa
cgcgcggcgaacgtgcccgcagtgtcctaccccgaggcactgccggtcagtcaacgcaaa
gacgacattgcccgcgcgatttccgaaaaccaggtggtgatcgtcgccggcgagacaggt
tctggcaagaccactcagatcccgaagatctgcctcgaactgggacgcggagttcgcgga
ctgatcggccatactcagccccggcgccttgccgcgcgaacggtcgccgagcgaatagcc
gaagaactcgacaccgaactcggcgacgccgtgggctacacagtgcgattcaccgatcaa
gtttccgaccgcacgtacgtgaagttgatgaccgacggcattctgcttgcggagattcag
cgcgacaagatgttgcgccgctacgacactctcatcatcgacgaggctcacgaacgcagc
ctcaacatcgacttcatcctcgggtatctggcgcagctactcccccgccgacccgacctc
aaggtcatcatcacctcggcgaccatcgaccccgagcggttcgctcagcactttgccgtc
gacgggaagcccgcgccgatcgtcgaggtgtccgggcgaaccttcccggtggaaatgcgt
taccgcccattgactgtcgaatccggagatatcagctacgaccgagatccggtcgacgcc
gtctgcgaagctgttgacgaactcagcgcagagggcgagggtgacatcctcgtcttcctg
tctggtgaacgcgagattcgtgacaccgcagatgcattgcgcgaccgcaggcttcgcaac
accgaaatcgttccactgtatgcacgcctgtcggcagccgaacagcacaaagtgttctct
ccgcacaccggccgacgagttgtcctggccaccaacgtcgccgaaacatctctgacggtt
cccggcattcgctacgtcgtcgatcccggaacagcgcgcatctcgcgatattccgtccgc
accaaggtgcaaaggctgccgatcgaaccgatttcccaggcatcagcgcgtcagcggtcc
ggtcgctgtggccgtgtcgccgagggtatctgcatccggctgtattccgaagaggacttc
gaagcccggccggcgttcaccgaaccggagatcctgcgcaccaacctcgcgtctgtgatc
ctgcagatgacggcgctgggtctcggcgatattgccgcattcccgtttgtggagcccccg
gattcgcgagccatcaaagacggcatcggactactcgaagaactgggcgctatcgcacga
ggatccgacgcgtcgcatccggaactgactccgatcggccgcgaactggcgcagattccc
gtcgaccctcgcatggctcgaatgttgttggaagccaagacaaacggagcgctgcacgag
acgctcgtcatcgtcgctgcactgtccattcaggacgtacgagagcggcccgccgagttc
cagcaggccgccgacgagaagcacgcccgcttcacggtggagaactccgacttcctcgcc
tatctgaagttgtgggactacctccgcgagcagcgaaacgatctgtcctcgagccaattc
cgcaagatgtgccgcaacgagttcctgcattggctacgcatccgcgaatggcaggatctg
cacgggcagttgcgtcagatcactcgcggactcggctggtcggtcaacgaacttcccgca
tccgagaattcggtccaccaatccttgctggccggcctgctctcccacatcggacttcgc
gaaggcgaaaagcgcgactacctcggtgctcgcggaagccgttttgcgatcttccccggc
tcgggcctgttcaagaagccaccccgctgggtaatggccgccgaactggtggagacaacc
aggctctgggcccgcatgtccgcgcgcatcgaaccggaatgggccgaaaaactggcacca
cacctggtcaaacggacctactccgagccgcattggtcctccaagcgtggttcggccatg
gcgtacgagcgcgtgacgctctacggcgtacccctggtcaccggacgcgctgtcacctac
tcgtcaatcgatccggaaacctcgcgcgaattgttcattcgccatgcgctggtgcagggc
gaatggactacacagcacaagttcttccacgaaaatcgcgcactgctcgacaacgtcgaa
gaactcgagaaccgggcccgccgacgcgacatcctggtcgacgacgagacgctgtacgag
ttctacgactcacgcgtcggcgccgaagctgtgtccgcgcgacacttcgacaagtggtgg
aagacagcacgccggcaagacccgaacctgttgacgttcacgcccgaaaccgtcgtgaat
tccgatgccgcaacggttctgggcggcgaataccccgatgcctggcgtcagggcgacatg
ctgttgccactgacctatcaattcgaaccaggcaaggacgacgacggcgtcaccgcgcac
attcccgtcggtctcctcgcacaactccaacccgtcgggttcgactggctggtaccgggc
atgcgtgtcgaattggtgtcggcattgatcaagacgctgcccaagaccatccggcggcag
gttgttccggcgcctgactatgcaagcgcagcactggcttccgtgaaaccacgatccgaa
ccactgctcacggcaatggcgcgcgagctgtcgcgtctgggcgcaacgcacatcgacgcg
aaggattttgatccgagcgcccttcctgatcaccttcgaatgacgtttgtggtcgaggac
gaatccggaaaagttctggccaaaggcaaggatctggctcagctacgacgcacactcgcc
ccgcgagttcagaaggaagttgccaaagcagcgaccggtaccgagcgggcagcctcgacg
gtgtggacctccgagacgctgggcgcactggagccgaccatcaccaggagcatcggcggc
cagcaggtcaccggatacccggcgctggtgccggaaaacggcggtgtggcagtacgggtt
ctcagtacccctgcagcgcaggcacaggcgatgcgcgagggcactcgggctcttcttctc
gcggcggtgccaacccaactcaaggcagtcacatcagggctgtcgaatacacaccgactc
atgctgggacagaatccggacggaagcctggaagcgttggtcgaggactgccgtgtagcc
gcagccaacgagatcatcgctgccaaaggtggaccggtacggacaccggaggctttcgag
gcactcgtcaaagcagcccgatcggagttggccgggcgcgtgtccgcgatactgcgcatg
atcgttccgatcctcgaacaatcacaccgcttgaatgtcgtcctccagcgatcgcgcgga
gaagccgccgaagacgttcgcgagcaactgaaatcgctcctcttccccggctttgtcgca
gaattgggttcggcgagactacgcgagctaccccggtacctggcggccgcgacattccgg
ctcgaagcgcttcctgccagcgctcatcgcgaccaccaagccatggacgttctcgatcgg
gtgtacgccgcgtacgacagattgctgaattcgctgccggaagagcgtcgtaccgccaaa
gatgtcgacgccatctcgtggatgatcgaggaacttcgggtgggactgttcgcacagtct
ctgggaaccccaactccagtctcggagaagcgggtactcaaagcaatcgaggcgatcaaa
cgctga
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