Rhodococcus globerulus: KYT97_27620
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Entry
KYT97_27620 CDS
T07544
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
rgo
Rhodococcus globerulus
Pathway
rgo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rgo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KYT97_27620
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rgo03019
]
KYT97_27620
03009 Ribosome biogenesis [BR:
rgo03009
]
KYT97_27620
Enzymes [BR:
rgo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
KYT97_27620
Messenger RNA biogenesis [BR:
rgo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
KYT97_27620
Ribosome biogenesis [BR:
rgo03009
]
Prokaryotic type
rRNA helicases
KYT97_27620
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Cas3-like_C_2
UvrA_inter
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
QXW02002
LinkDB
All DBs
Position
complement(6080528..6082291)
Genome browser
AA seq
587 aa
AA seq
DB search
MSDIERDPEPPTFADLDIDDRVLKALSDVGYESPSPIQAATIPPLLEGKDVVGLAQTGTG
KTAAFAVPVLSRIDTSIKQTQALVLAPTRELALQVAEAFGKYSAHIPGLNVLPIYGGQSY
GVQLSGLRRGAHVVVGTPGRVIDHLEKGTLDLTNLKYLVLDEADEMLKMGFQEDVERILR
DTPSEKQVALFSATMPGSIRRISKQYLNNPVEITVKSKTSTASNITQRYIQVAHQRKLDA
LTRVLEVEAFEAMIIFVRTKQATEELAEKLRARGHSAAAINGDIVQTQRERTIGQLKNGA
LDILVATDVAARGLDVDRISHVVNYDIPHDTESYVHRIGRTGRAGRQGDALLFVAPRERH
LLKSIEKATRQPLAEMQLPSVDDVNAQRVSKFGDSITESLASENLALFRKMIEDYDQEHD
VPLIDIAAALAVQSRDGDAFLLAPEPPAPPRREREPREPRPPRRFDDGPAPRSRGPEGQE
LAAYRIAVGKRHRVVPGAIVGAIANEGGLRRSDFGHISIRPDHSIVELPADLSNETLEAL
RRTRISGVLIQLQPDFGPPQGRPSGRGGRDDRGGRDSRGGGRDRYDS
NT seq
1764 nt
NT seq
+upstream
nt +downstream
nt
atgagtgatattgagcgtgaccccgaacccccaacatttgccgacctcgacatcgatgat
cgggtactgaaggcactgtctgacgtgggctacgagtcgccctcgccgatccaggctgcc
accattccgccgctgctcgaaggcaaggacgtcgtcggacttgcccagaccggtaccggt
aagaccgcggccttcgcggttcccgtcctgtcgcggatcgacacgtcgatcaagcagacg
caggcactggtgctggctccgacacgtgagctcgcgttgcaggttgccgaggcattcggc
aagtactccgcgcacatccccggcctcaacgtcctgccgatctacggcggccagagctac
ggtgtccaactgtccggcctgcggcgcggcgcgcacgttgtggtcggtacgcccggtcgt
gtcatcgaccacctcgaaaagggcactctggacctgaccaacctcaagtacctcgttctc
gacgaggccgacgagatgctcaagatgggtttccaggaggacgtcgagcgcatcctccgc
gacacccccagcgagaagcaggttgccctgttctccgcgacgatgcccggttccatccgt
cgcatctcgaagcagtacctgaacaacccggtcgagatcacggtcaagtccaagacctcg
acggcgtcgaacatcacgcagcgctacatccaggtcgcgcaccagcgcaagctcgacgcg
ttgacccgtgtcctcgaggtcgaggccttcgaggcgatgatcatcttcgtccgcaccaag
caggccaccgaagagctggcagaaaagctgcgcgctcgcgggcactccgctgccgccatc
aacggtgacatcgtgcagacgcagcgtgagcggaccatcggtcagctcaagaacggtgca
ctcgacatcctcgtggccaccgacgtcgctgcgcgtggtctggacgtcgaccgcatctcg
catgtcgtgaactacgacatcccgcacgacaccgagtcatacgtccaccgcatcggccgt
acgggtcgcgccggacgccagggtgacgcgctgctgttcgtcgctccgcgtgagcgtcat
ctgctcaagtccatcgaaaaggcaacccgccagccgctggccgagatgcagttgcccagc
gtcgacgacgtgaacgcgcagcgtgtttccaagttcggtgactccatcaccgagagcctg
gcatccgagaacctggcgctgttccgcaagatgatcgaggactacgaccaggaacacgat
gttccgctcatcgacatcgctgccgccttggcagtgcagtcgcgtgacggcgacgccttc
ctgctcgctcccgagccgccggcaccgccgcgtcgtgagcgtgagccgcgcgaaccgcgt
ccgccgcgccgattcgacgacggtccggctccgcgttcgcgtggacccgagggccaggag
ttggcggcgtaccgcatcgcggtcggtaagcgtcatcgcgtagtgccgggtgccatcgtc
ggtgccatcgccaacgagggcggcttgcgtcgcagcgacttcggacacatcagcattcgt
cccgatcactccatcgtggagttgccggcagatctgtccaacgagaccctcgaggctctg
cgacggacgcgtatctccggcgtcctgatccagttgcagcctgacttcggcccgccgcag
ggacgcccgagcggccgcggtggtcgtgacgaccgtggtggacgcgacagtcgtggtggc
ggacgcgatcgctacgacagctga
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