Rhodococcus gordoniae: NMQ04_08150
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Entry
NMQ04_08150 CDS
T08682
Name
(GenBank) ribonuclease E/G
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
rgor
Rhodococcus gordoniae
Pathway
rgor03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rgor00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NMQ04_08150
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rgor03019
]
NMQ04_08150
03009 Ribosome biogenesis [BR:
rgor03009
]
NMQ04_08150
Enzymes [BR:
rgor01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
NMQ04_08150
Messenger RNA biogenesis [BR:
rgor03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
NMQ04_08150
Ribosome biogenesis [BR:
rgor03009
]
Prokaryotic type
rRNA processing factors
NMQ04_08150
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
IF2_N
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
UTT50130
LinkDB
All DBs
Position
1762878..1766180
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AA seq
1100 aa
AA seq
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MADQEPPEDNSIEASDAEGRNLLGLPAKIRVHALAKLLGLTSKQVIAKAAERGTELRSAH
STLPRDVAEGLHAALSDTGTPEPAVQEAEAAPEAPAAEPAAEHTPERAAETAPEPAKAEA
EETAEAVPVESAEAVPVESGELRPAEKASDETAPQAVETPSVGGPTGLFTSVEQSTPLFE
MPEPSTTTESIVAAPLFLQPEVPSPAEEETRPRRRRARRGKDAEQPVAEEEQQPAESAET
AAAESTEDAASSQAEEDQDDQPRRRRRGRRGRGRGRGDGTDIEQDETTATGEDTESSAAE
AEESPAEDTSSTEKDTTEESTSGDEQSTDEHDEDDEQGGTSRRRRRRRRRRGSADTDTAS
TEDDSVPTVVHEREPRPKSRVKDEVQGISGSTRLEAKRQRRRDGREAGRRRPPILTESEF
LARREAVDRVMVVRERTGGAHAGMTQVAVLEDGILVEHFVTTSGSASMVGNIYLGRVQNV
LPSMEAAFIDIGRGRNGVLYAGEVNWEAAGLGGNSRKIEQALKPGDQVVVQVSKDPVGHK
GARLTTQISLAGRFLVYVPGGSSTGISRKLPDTERKRLKDVLREIVPAEAGVIIRTAAEG
VSEEELSRDVTRLQTQWEAIREQSEKLQADASGQPKTLYEEPDLLVKVVRDLFNEDFSKL
VIEGDSAWNTVESYIRTVAPDLLPRVERYRSENSVDVFGAHRIDEQLAKALDRKVWLPSG
GTLVIDRTEAMTVIDVNTGKFTGSGGNLEETVTRNNLEAAEEIVRQMRLRDIGGMIVVDF
IDMVLESNRDLVLRRLTEALGRDRTRHQVSEVTSLGLVQMTRKRLGTGLVEAFSTTCEHC
GGRGLIVHSEPIESKSSDDSGRSSGGGSRRKRGRDKSSQEPAAEMPTHSPDEVVKRAPHP
VALAMAAHNSAPAEEAPATGTAPEAAAVPAPAAEVDPVKVTEPLNAVEPEKVSAPTKGSV
AGEDATTVTTASDEPAEIEAEVAAAESAVAETAVSEAAATAAAGSESAQSTDGAASAGAA
EPAPRRRRARRVARAAAAPAGETGPEATVFVVPVTADASTGAEPESPPSTPVETPVEIVR
RPRSRRAAGRPAGPPVDAEA
NT seq
3303 nt
NT seq
+upstream
nt +downstream
nt
gtggccgatcaagagccgccggaagacaactcgatcgaagcgtcggacgcagagggacga
aacctcctcggtctgcctgccaagatccgcgtccatgccctcgccaagttgctggggctg
accagtaagcaggtgatcgcgaaagccgccgagcgtggcaccgagctgcgcagtgcgcac
tcgacgctccctcgcgacgttgcggagggcctgcacgccgcgctgagcgatacaggtacg
cccgagcctgcagtgcaggaagccgaagcggctcccgaagccccagccgccgagcccgca
gcagagcacacccccgagcgcgcagccgagacggcgcccgagcccgcgaaggcagaggca
gaggagactgccgaggctgtgccggtcgagagcgccgaggctgtgccggtcgagagcgga
gagctccggcccgccgagaaggcctcggacgagaccgcgccgcaggcagtggagaccccg
tccgtcggaggacccaccgggctgttcacgtccgtggagcagagcacgccgctgttcgag
atgcccgagccgtccaccacgaccgagtcgatcgtcgccgcgccgctgttcctgcagccc
gaggtaccctcgcccgccgaggaggagacccgtccgcggcggcgacgtgcgcgtcgcggc
aaggacgccgagcagccggtggcagaggaagagcagcagcccgccgagtccgccgaaacg
gccgccgccgagtccaccgaggatgcggcctcgtcgcaggccgaggaagaccaggacgac
cagccgcgtcgccgtcgtcgcggacgtcgcggtcgtgggcggggccgtggggacggcacc
gacatcgagcaggacgagaccacggcgaccggggaggacaccgagtcgtccgccgcggag
gcggaggagtcccccgccgaggacacgtcctccaccgagaaggacaccaccgaggaatcg
acctcgggcgacgagcagagcaccgacgagcacgacgaggacgacgagcagggcgggacg
tcgcgtcgtcgtcgccgccgccgtcgtcgtcgcggttccgccgacaccgacaccgcgagc
accgaggacgactcggttcccacggtcgtccacgagcgggagccgcgtccgaagagccgc
gtcaaggacgaggtccagggcatcagcggttcgacgcgtctcgaggcgaagcgtcagcgt
cgccgcgacggccgcgaggcgggtcgccgtcggcccccgatcctcaccgagtccgagttc
ctcgcgcgtcgtgaggccgtcgaccgggtgatggtcgtgcgtgagcgcacaggtggcgcc
catgcgggaatgacgcaggtcgccgtgctcgaggacggcatcctcgtcgagcacttcgtc
acgacctccgggtcggcgtcgatggtcggcaacatctacctgggccgcgtgcagaacgtg
ctgccgtccatggaggccgcgttcatcgacatcggccgcggacgcaacggcgtgctctac
gccggcgaggtgaactgggaggccgcgggcctcggcggcaactcgcgcaagatcgaacag
gccctcaagcccggcgaccaggtggtcgtgcaggtcagcaaggacccggtcggccacaag
ggtgcgcgtctgaccacccagatcagcctggccggacgcttcctggtgtacgtgccgggt
ggatcgtccacgggcatcagccgcaaactgcccgacaccgagcgcaaacgtctcaaggac
gtcctccgcgagatcgtccccgccgaggcgggcgtgatcatccgcaccgctgccgagggc
gtgagcgaggaggaactctcgcgcgacgtcacccggctgcagacgcagtgggaggcgatc
cgtgagcagtccgagaagctgcaggccgacgcctcgggacagccgaaaaccctctacgag
gagccggatctgctcgtcaaggtcgtgcgcgacctgttcaacgaggacttctccaagctc
gtcatcgagggcgactctgcgtggaacaccgtcgagagctacatccgcacggtcgcgccc
gacctgctgcctcgcgtcgagcgctaccgctcggagaactcggtggacgtcttcggcgcg
caccgcatcgacgagcagctcgcgaaggcactcgaccgcaaggtgtggctgccctccggc
ggcacgctcgtcatcgaccgcaccgaggcgatgaccgtcatcgatgtcaacaccggcaaa
ttcaccggttccggtggcaatctcgaggagacggtcacccgaaacaacctcgaggcggcc
gaggagatcgtccggcagatgcgcctgcgcgacatcggcggcatgatcgtcgtcgacttc
atcgacatggtgctcgagtccaaccgcgatctcgtgctgcggcgcctgaccgaggcactc
ggccgggaccgcacccgccaccaggtctcggaggtcacctcgctcggcctggtccagatg
acgcgtaagcggctcgggaccggtctcgtcgaggcgttctccaccacctgcgaacactgc
ggtggccgtggcctcatcgtgcattcggagccgatcgagtcgaagtcctcggacgattcg
ggtcgttcgtccggtggcggttcgcgccgcaagcgcggacgcgacaagagctcgcaggag
cccgccgccgagatgcccactcattcgcccgacgaggtggtcaagcgtgcaccgcatcct
gtggcgctcgcgatggccgcgcacaattcggcaccggccgaggaagcgccggcgaccggg
acggcgccggaggctgctgccgtgccggcaccggccgccgaggtcgatccggtcaaggtc
accgagccgttgaatgccgtcgagccggagaaggtctccgcaccgacgaagggctccgtc
gccggggaggacgccaccacggtgacgaccgcctccgacgagcccgccgagatcgaagca
gaggtcgcagcggccgagtccgcggtcgcggagaccgccgtgtccgaggctgccgcaacg
gcggctgccggctccgaatccgcacagagcaccgacggagcggcttccgccggcgccgca
gaaccggccccgcgtcgccgccgtgcacgcagggtcgcccgggcagccgccgcgcctgcc
ggggagaccgggccggaagccacggtgttcgtcgtccccgtcacggccgacgcttctacc
ggagccgagccggagtccccgccgagcacaccggtggagacgccggtggagatcgtgcgg
cggccgcgttcgcggcgcgccgcggggcgtcccgcgggtccgcccgtcgacgccgaggcg
tga
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