Rhodococcus gordoniae: NMQ04_08210
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Entry
NMQ04_08210 CDS
T08682
Name
(GenBank) DEAD/DEAH box helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
rgor
Rhodococcus gordoniae
Pathway
rgor03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rgor00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NMQ04_08210
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rgor03019
]
NMQ04_08210
03400 DNA repair and recombination proteins [BR:
rgor03400
]
NMQ04_08210
Enzymes [BR:
rgor01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
NMQ04_08210
Messenger RNA biogenesis [BR:
rgor03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NMQ04_08210
DNA repair and recombination proteins [BR:
rgor03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
NMQ04_08210
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
RecQ_Zn_bind
AAA_30
SWI2_SNF2
Motif
Other DBs
NCBI-ProteinID:
UTT50142
LinkDB
All DBs
Position
complement(1776800..1778932)
Genome browser
AA seq
710 aa
AA seq
DB search
MTNSTELLRDDAEHLLRELAGPDARLRGDQWVAIEALVVHRRRALVVQRTGWGKSAVYFI
SAKLLRRQGRGPTVIVSPLLALMRNQVAAAERAGVHAATINSGNVTEWDSIHEQIAAGEV
DVLLVSPERLNNPDFRDQVLPSLARDAGLVVVDEAHCVSDWGHDFRPDYRRIRTLVSELG
DDIPVLATTATANDRVVADIAAQLGVGGNGDVGGSSDPGPGETLVLRGGLDRPSLHLSVV
RIDEPARRAAWLAQHLKDLPGSGIVYALTVSAARDLAALLADHGYAVAAYTGQTEPTERE
QLEADLLDNKVKALIATSALGMGFDKPDLGFVVHLGAPSSPISYYQQVGRAGRSTDRAEV
VLLPGPEDRRIWQWFASVAFPDETLVRRVIAALDIERPVSTPALEPRVDLTRSRLEMVLK
VLDVDGAVKRVKGGWIATGQPWVYDDERYGRLEEARAAEQEAMLEYEHTTECRMVFLRRQ
LDDPGLDAQGTGCGRCDNCTGSRWATSVGDDEVARTRARLERPGVDLPPRRQWPTGMSTL
GIPLSGRIADGPRPGRVLGRLSDLGWGPRLRELLDGPDREVPKAVVDASIAVLAAWDWEE
RPTAVMALESPDHPLLVESLASRLAQIGRLRDLGVLRRRSGNTEPTAANSAYRVAALIDA
WEQPDTVGSSGPILLVDAVTDTGWTFTMAARTLVAAGADAVLPYALASPK
NT seq
2133 nt
NT seq
+upstream
nt +downstream
nt
atgacgaactccaccgagcttttgcgcgacgacgccgagcatctcctccgcgaactggcg
ggtcccgacgcccggctccgcggcgaccagtgggtcgcgatcgaagcgctcgtggtgcac
cgtcgccgcgccctcgtcgtgcagcgcacgggctgggggaagtcggccgtctacttcatc
tccgccaagttgttgcgtcggcagggccggggtccgaccgtgatcgtctcgccgctgctc
gcgctgatgcggaaccaggtcgcggccgccgagcgggccggcgtccacgcggcgaccatc
aactccggcaatgtcacggagtgggactcgatccacgagcagatcgcggcgggcgaggtc
gacgtactcctcgtgagccccgagcgcctcaacaatcccgacttccgcgaccaggtgcta
ccgtctctcgcccgcgatgccggactggtggtcgtcgacgaggcgcactgcgtgtcggac
tggggtcacgacttccggcccgactaccgccgaatccgcaccctcgtctccgaactcggc
gacgacatcccggtgctggcgacgaccgcgaccgccaacgaccgggtggtggcggacatc
gccgcacaactcggtgtgggcgggaacggcgatgtcggcgggagcagcgatcccggcccc
ggcgagacactcgtgctgcgcggcgggctcgaccgtccgtcgctgcacctgtcggtggtg
cggatcgacgagccggcacggcgtgcggcgtggctcgcgcagcatctgaaggacctgccg
ggctcgggcatcgtctacgcgttgacggtctccgccgcccgcgacctcgcagcgctcctg
gccgaccacggttacgcggtggccgcgtacaccgggcagaccgaaccgaccgaacgcgaa
caactcgaggccgacctgctcgacaacaaggtcaaggcactcatcgccacctcggcactc
ggcatgggtttcgacaagcccgacctcggcttcgtggtccatctcggtgccccgtcgtcg
ccgatctcctactaccagcaggtggggcgcgcgggtcgctccaccgaccgtgccgaggtg
gtcctgctccccggccctgaagaccgccggatctggcagtggttcgcgtccgtcgccttc
ccggacgagactctcgtccgtcgtgtgatcgcggcgctcgatatcgaacggccggtgtcg
acccccgccctcgaacctcgggtcgacctcacccgctcacgcctggagatggtcctcaag
gttctcgatgtcgacggagctgtgaagagggtcaagggtggctggatcgccaccgggcag
ccgtgggtgtacgacgacgagcggtacgggcgcctcgaggaggcacgcgcggcggagcag
gaggcaatgctcgaatacgagcacaccaccgaatgccgcatggtcttcctgcgtcgccag
ctcgacgaccccggactcgatgcgcagggcaccggctgcggtcgctgcgacaactgcacc
ggctcccgatgggcgacgtccgtcggcgacgacgaggtcgcccggacccgggcccgactc
gaacgccccggcgtcgatctgccgccgcgccgccagtggcccaccgggatgtcgacgctc
gggattcccctgtcgggacggatcgcggacggacctcgtcccggccgcgtcctgggtcgg
ctgtcggatctgggctgggggcctcgactccgggaactgctcgacgggccggatcgcgag
gtaccgaaggcggtggtcgacgcgtcgatcgcggtgctcgccgcgtgggactgggaggaa
cgaccgaccgcggtcatggcgctggaatcccccgaccaccccctcctcgtggagtccctc
gcgtcacgattggcacaaatcggacgattacgagatctaggtgtactacgacgccgtagc
gggaatacggagcccacggcagcgaactcggcataccgggtcgccgcgttgatcgatgcg
tgggaacaacccgacacggtcgggtcgagtggtccgatcctcctcgtcgacgcggtgacc
gacaccggctggacgttcaccatggcggcgagaaccctcgtcgccgcgggagccgacgcg
gtgttgccgtacgcactcgcgagcccgaagtaa
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