Rhodococcus gordoniae: NMQ04_09520
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Entry
NMQ04_09520 CDS
T08682
Name
(GenBank) ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
rgor
Rhodococcus gordoniae
Pathway
rgor03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rgor00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NMQ04_09520
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rgor03019
]
NMQ04_09520
03400 DNA repair and recombination proteins [BR:
rgor03400
]
NMQ04_09520
Enzymes [BR:
rgor01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
NMQ04_09520
Messenger RNA biogenesis [BR:
rgor03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NMQ04_09520
DNA repair and recombination proteins [BR:
rgor03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
NMQ04_09520
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
ResIII
DUF3553
Cas3-like_C_2
TniB
Motif
Other DBs
NCBI-ProteinID:
UTT50667
LinkDB
All DBs
Position
complement(2049026..2050747)
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AA seq
573 aa
AA seq
DB search
MYRSSPERASDEAREELCAAAQNVFGWSALRPEQLDAMVPLLDGRDVLAVMATGSGKSAI
YQVPSLLLPGVTVVVSPLIALQNDQIAGLDHSEAPDAVAINSRQPESENEANWRAVLEHD
ADYVFLAPEQLVKDEVLDRLRDVQVSLLVVDEAHCVSMWGHDFRPEYLRLGDVVETLGRP
PLVALTATASPPVRDDIVAALGMRDPLVVAGGFDRPNLDIEVRRSTDDGEKRRAVVEAVV
SMPGPGIVYAATRKDTERYADALRERGIEACPYHAGMRAGEREDVHLGFLDGRCEVVVAT
SAFGMGIDKPDVRFVVHASIPDSVDSYYQQIGRAGRDGEPATVLMFYRPEDLSLATFFTT
HHPDEELIARVFSAVRAGSPMRLGQLRAELDVRGRRLSNAVNLLERCGALVSGRRGLSVA
DVSRRTAVERARETAAAGERLDRSRVDMMRGYAETRGCRRRFLLGYFGESLPAPCGRCDT
CRDGAADEAGTVSALPSPGGYSSVLAPNTRVVHAEWGPGVVMTGEHDRVTVLFDDEGYRT
LSLEAVAESGVLTVDGEDAPSEPAPVHTEEPVA
NT seq
1722 nt
NT seq
+upstream
nt +downstream
nt
atgtatcgatcctcgcccgaacgagcgtcggacgaggcacgcgaggaactctgtgccgcc
gcgcagaatgtcttcggctggagcgctctgcgccccgagcaactggacgccatggtgccg
ctgctcgacggacgcgacgtcctcgccgtcatggccaccggctccgggaaatccgcgatc
tatcaagtgccctcgttgctgctaccgggggtgaccgtggtcgtctcgcctctgatcgcg
ctgcagaacgatcagatcgccggtctcgaccactcggaggcgcccgacgcggtcgccatc
aattcgcgccagcccgagtccgagaacgaggcgaactggcgtgccgtgctcgaacacgat
gccgactacgtattcctcgctccggaacaactcgtcaaggacgaggttctggaccgtctg
cgcgacgtgcaggtctcgctcctcgtcgtcgacgaggcgcactgcgtctcgatgtggggt
cacgacttcagaccggaatacctgcgcctgggagacgtggtcgagacgctcggtcgccca
cccctcgtggccctcaccgccacggcctcgccgccggtccgcgacgacatcgtcgcggcg
ctgggtatgcgggatccgctcgtcgtcgccggcggtttcgaccggccgaatctcgacatc
gaggtgcgcaggtccaccgacgacggagagaagcggcgcgccgtcgtcgaggccgtggta
tcgatgcccggcccggggatcgtctacgccgcgacccgcaaggacaccgagcggtacgcc
gatgccctgcgtgaacgtgggatcgaggcgtgtccctatcacgccggaatgcgcgccggg
gagcgcgaggacgtccacctcggctttctcgacggtcgctgcgaggtcgtggtggcgacc
tccgctttcggcatgggcatcgacaagcccgacgtgcgtttcgtcgttcacgcctcgata
cccgactcggtcgattcctactaccagcagatcgggcgcgcggggcgggacggggaaccg
gccaccgtcctgatgttctaccggcccgaggatctctcgctcgcgaccttcttcaccacc
catcatcccgacgaggagttgatcgcccgggtgttctcggcggttcgcgccggatccccg
atgcggctcggacagttgcgtgccgagctggacgtgcgggggcgcaggttgtcgaacgcc
gtgaacctgctcgaacggtgcggagctctcgtgtccggccggcgaggactctccgtcgcc
gacgtctcgcgccggacggcggtcgagcgcgcacgggagacggcggcggcaggtgagcgc
ctggatcgctcccgcgtcgacatgatgcgtggctacgccgagacccgcgggtgccgacgc
cgattcctcctcggatacttcggcgagtcactccccgcgccgtgcggccggtgcgacacc
tgccgggacggcgccgccgacgaggccgggacggtctcggcgcttccgtcccccggcgga
tactcctccgtgctcgccccgaacacgcgcgtcgtacacgccgagtggggaccgggagtg
gtcatgacgggcgagcacgatcgtgtcaccgtcctgttcgacgacgagggttaccggacg
ttgtcgctcgaggcggtcgccgaatcgggtgtgctcacggtcgacggcgaggacgccccc
tcggaacccgcgcctgtccacacggaagaacccgtggcgtga
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