Rhodococcus gordoniae: NMQ04_11100
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Entry
NMQ04_11100 CDS
T08682
Name
(GenBank) DEAD/DEAH box helicase
KO
K03727
ATP-dependent RNA helicase HelY [EC:
5.6.2.6
]
Organism
rgor
Rhodococcus gordoniae
Brite
KEGG Orthology (KO) [BR:
rgor00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rgor03019
]
NMQ04_11100
Enzymes [BR:
rgor01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
NMQ04_11100
Messenger RNA biogenesis [BR:
rgor03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
NMQ04_11100
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
DEAD
ResIII
Helicase_C
MTR4-like_stalk
AAA_22
nSTAND3
WSK
Motif
Other DBs
NCBI-ProteinID:
UTT50682
LinkDB
All DBs
Position
2374976..2377717
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AA seq
913 aa
AA seq
DB search
MPGAGGDDASGAAPLAVTPQLADFAAELGFPLDPFQIEACRALEGGHSVLVCAPTGAGKT
VVGEFAVYLALQAGSKCFYTTPIKALSNQKYADLCARHGRHSVGLLTGDQSVNSDAPVVV
MTTEVLRNMIYASSTALIGLTHVVMDEVHFLADRFRGAVWEEVILHLPEDVRLASLSATV
SNAEEFGDWMTTVRGDTTVVVDEVRPIPLHQHMMLGSRIYDLFDRRADTETAPTRRRRDI
VVNPELASAVRQRQSLSGMDRWGERGPRFRPPPRPEVIVRLDRDGLLPAITFVFSRAGCD
AAVQQCLRSGLHLTDETEAAEIRRIVDEHTRDLPRGDLEVLGYASWRTALERGIAAHHAG
MLPAFRHTVEELFVRGLVRAVFATETLALGINMPARTVVLEKLVKFNGDTHAELTPGEYT
QLTGRAGRRGIDVEGHAVVLWQPGVEPAAVAGLASTRTFPLRSSFRPSYNMAVNLIDAVG
VDRSRALLEMSFAQFQADKSVVGLKRGIDRNETTLAQLRDQLGGEDSEILDYLRMRAELT
DAERAHERRGKQDRRTAAVASLVPLRRGDIITVPAGKHTGLAVVVLPDTDAGDPRPQVVT
ADGWSGRLSAGDFPTPATVLGSLRLPRHVDHRTGRGRRDIASALRSKGLVPPRRPKRSKA
KGDTREIDALRRELKHHPARKHPDLDALARVGERYHRLLRETQQQRRKAAAATDSLARTF
EKIVALLTERGYLTEGADPATTEAGERLARIYTESDLLVAECVRRRAWAGLSAAELAAVA
SAVIYESRTDEPVTVVGPTGPIRHALAETTRICDGLRADEIRHRLPPTREPDLGFVTAAY
TWASTASLTEALVAAETAGKELSPGDFVRWCRQLIDLLDQIRTCADDPELARTAGKAVGA
VRRGVVAVDPTAE
NT seq
2742 nt
NT seq
+upstream
nt +downstream
nt
gtgcccggtgcgggcggtgacgacgcttcgggcgccgctccgctcgccgtcaccccgcag
ctcgcggacttcgccgcggaactcgggttccccctcgacccgttccagatcgaggcgtgc
cgcgccctcgagggcggccattcggtgctggtgtgcgcccccaccggcgccggcaagacc
gtcgtcggcgagttcgcggtgtacctggcgctgcaggccggctccaagtgcttctacacc
accccgatcaaggcgttgagcaaccagaagtacgccgacctgtgtgcccggcacggccgc
cactcggtcggtctgctcaccggcgaccaatccgtcaattccgatgcgccggtggtggtg
atgaccaccgaggtgctgcgcaacatgatctacgcgtcgtccaccgccctgatcgggctc
acccacgtggtgatggacgaggtgcatttcctcgccgaccggttccgcggcgcggtgtgg
gaagaggtgatcctgcacctgccggaggacgtgcggctggcgtcgctgtccgcgacggtg
tccaacgccgaggagttcggcgactggatgaccacggtgcgcggcgacaccaccgtcgtc
gtcgacgaggtgcggcccatcccgctgcaccagcacatgatgctcggctcccgcatctac
gacctgttcgaccgccgcgccgacaccgagaccgccccgacccggcggcgccgcgacatc
gtcgtcaaccccgaactggcgtcggcggtgcggcaacggcagagcctgtccgggatggac
cgctggggcgaacgcggcccccgcttccggccgccgccgcgcccggaggtcatcgtccgc
ctcgaccgcgacggtctgctgcccgccatcaccttcgtgttcagccgcgccggctgcgac
gccgcggtgcagcagtgcctgcgctcggggttgcatctgaccgacgagaccgaagccgcc
gagatccgccggatcgtcgacgaacacacccgggacctgccgcgcggcgacctcgaggtg
ctcggctacgcgtcgtggcgcaccgccctcgaacgcggcatcgccgcccaccacgcgggg
atgctgccggccttccggcacaccgtcgaggaactgttcgtgcgtgggctggtgcgggcg
gtgttcgccaccgaaaccctcgcgctgggcatcaacatgccggcgcgcaccgtggtgctc
gaaaaactcgtcaagttcaacggcgacacccacgccgaactgacccccggcgagtacacg
cagctgaccggccgcgccgggcgtcgcggcatcgacgtcgaaggccacgcggtggtgctg
tggcaaccgggcgtcgagccggccgcggtcgccgggctcgcctccacccgcaccttcccg
ctgcgcagctcgttccgcccgtcctacaacatggcggtcaacctcatcgacgccgtcggc
gtggaccggtcgcgggcgctgctcgagatgtccttcgcccagttccaggccgacaagtcg
gtggtcgggctcaaacgcggcatcgaccgcaacgagaccaccctggcgcagctgcgcgac
cagctcggcggtgaggacagcgagatcctcgactatctgcggatgcgcgccgaactgacc
gacgccgaacgcgcccacgagcggcgcggaaagcaggatcggcggaccgcggcggtggcg
tcgctggtgcctctgcgccgcggcgacatcatcacggtacccgccggcaaacacaccggg
ctggcggtggtggttctgccggacaccgacgccggcgatccgcggccgcaggtggtcacc
gccgacggctggtccggtcgcctctcggccggggatttcccgacgccggcgacggtgctg
ggctcgttgcggctgccgcggcacgtcgatcaccgcaccggccgcgggcgccgcgacatc
gcgtcggcgctgcgatcgaagggcctggtgccgccgcgccgtcccaagcgcagcaaggcc
aaaggcgacacccgcgagatcgacgcgttgcgccgcgagctcaagcaccatccggctcgc
aagcatcccgatctcgatgcgctcgcgcgtgtcggggagcgctaccaccggttgctgcgc
gagacgcagcagcagcgtcgcaaggccgccgcggcgacggattcgctggcgcgcaccttc
gagaagatcgtcgcgctgctcaccgaacgtggctatctcaccgagggtgccgatccggcg
accaccgaggcgggggagcggctcgcccgcatctacaccgagtcggatctgctggtcgcc
gaatgcgtgcgccgccgcgcctgggcgggactgtccgccgccgagctggcggcggtcgcc
tcggcggtgatctacgagtcgcgcaccgacgagccggtcaccgtcgtcggacccacgggg
ccgatccggcacgcgctggccgagaccacccggatctgcgacgggttgcgggccgacgag
atccggcaccggctgccccccacccgggaaccggatctgggattcgtcaccgccgcctac
acgtgggcgtccaccgcgtcgctgaccgaggcgctcgtcgccgcggagacggccggcaag
gaactctcgcccggggatttcgtgcggtggtgccggcagctgatcgatctgctcgaccag
atccgcacctgcgcggacgatccggagctcgcccgcaccgcgggcaaggcggtcggggcg
gtgcgccgcggtgtcgtcgccgtcgatcccaccgccgagtag
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