Rhodococcus gordoniae: NMQ04_12545
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Entry
NMQ04_12545 CDS
T08682
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
rgor
Rhodococcus gordoniae
Pathway
rgor03030
DNA replication
rgor03430
Mismatch repair
rgor03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rgor00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NMQ04_12545 (dnaE)
03430 Mismatch repair
NMQ04_12545 (dnaE)
03440 Homologous recombination
NMQ04_12545 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rgor03032
]
NMQ04_12545 (dnaE)
03400 DNA repair and recombination proteins [BR:
rgor03400
]
NMQ04_12545 (dnaE)
Enzymes [BR:
rgor01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
NMQ04_12545 (dnaE)
DNA replication proteins [BR:
rgor03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
NMQ04_12545 (dnaE)
DNA repair and recombination proteins [BR:
rgor03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
NMQ04_12545 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
Motif
Other DBs
NCBI-ProteinID:
UTT47123
LinkDB
All DBs
Position
complement(2705000..2708536)
Genome browser
AA seq
1178 aa
AA seq
DB search
MADSFVHLHTHTEYSMLDGAAKVGPLFKEAERLGMTAVGMTDHGNMYGASEFYNVAKKFG
IKPIIGIEAYVAPESRFSTKRVLWGDRSQKSDDVSGSGAYTHMTMVAENSTGLRNLFKLS
SLASIEGQLGKWARMDEELIARHHEGIIATTGCPSGEIQTRLRLGHDREALEAAAKWQEI
WGKDNFFLELMDHGLSIERRVREGLLEIGRKLDIPPLVTNDCHYVTKDAAANHEALLCIQ
TGKTLSDPTRFKFDGDGYYLKSAREMREQWDREVPDACDNTLLIAERVQSYDEVWAHRDR
MPVFPVPEGETQASWLHKEVMRGLDRRFPAGPPREYVERAEYEITVINQMGFPAYFLVVG
DLINHAREVGIRVGPGRGSAAGSLVAYAMGITNIDPIPHGLLFERFLNPERVSMPDIDID
FDDRRRGEMVRYATERWGNDKVAQVITFGTIKTKAAIKDSARVQFGQPGFAIADQITKAL
PPPIMAKDIPVSGITDPSHERYKEAAEVRQLIESNPDIKKIYDTALGLEGLIRNAGVHAC
AVIMSSEPLMDAIPLWKRAQDGAIITGWDYPSCEAIGLLKMDFLGLRNLTVIGDAIENIK
VNRGIDLDLDTLPLEDPATYELLARGDTLGVFQLDGSAMRDLLRRMQPTGFEDIVAVLAL
YRPGPMGMNAHNDYADRKNGRQEVKPIHPELEEPLKDILADTYGLIVYQEQIMQIAQKVA
GYSLGQADLLRRAMGKKKKEILDEAYDGFAQGMKDNGFSQAAITALWDTVLPFAGYAFNK
SHAAGYGLVSFWTAYLKANYPAEYMAGLLTSVGDDKDKAAVYLSDCRKMGITVLPPDVNE
SHTNFMSVGEDIRFGLGAVRNVGANVVASIIKGREEKGRYTDFSDYLNKIDTVACSKKVT
ESLIKAGAFDSLEHPRKGLMLVHADAIDAVMSTKKAEAIGQFDLFGGADADESVAAVFNV
RIPEEEWDTKHLLALEREMLGLYVSGHPLNGVEHVLASQADTQIPAILEGALKDGTQVTV
GGILASVNRRINKNGLAWASAQLEDLTGGIEVLFFPQSYAVYGMDVVEDSVVLVKARVSI
RDDRISLIANDLVVPDLSQIGVAKPVSVSMPTRLCTPDKVGALKNVLTRHPGSSDVHVRL
ITGSKVTVLKLDDSLRVEASSALMGDLKALLGPGCLAT
NT seq
3537 nt
NT seq
+upstream
nt +downstream
nt
gtggctgactcgttcgttcatctgcacacccacaccgagtactcgatgctcgacggtgcc
gccaaggtcggaccgttgttcaaagaggccgaacggctggggatgacggccgtcggcatg
accgaccacgggaacatgtacggcgccagcgagttctacaacgtcgcgaagaagttcggt
atcaagccgatcatcggtatcgaggcgtatgtggcgccggagtcgcggttctccaccaaa
cgtgtgctgtggggcgaccgcagccagaagtccgacgacgtctccggctcgggtgcctac
acccacatgacgatggtcgccgagaactcgacgggtctgcggaacctgttcaagctgtcc
tcgctcgcctcgatcgaaggtcagctcggcaagtgggcgcggatggacgaagagctcatc
gcccggcaccacgagggcatcatcgccaccaccggctgcccgtcgggcgagatccagacg
cgtctgcgcctcggccacgaccgcgaggcgctcgaggccgccgcgaaatggcaggagatc
tggggcaaggacaatttcttcctcgagctgatggatcacggcctgtcgatcgagcgtcgg
gtgcgtgagggtctgctcgagatcggccgcaagctcgacatcccgccgctggtgaccaac
gactgccactacgtcaccaaggatgcggccgcgaaccacgaggcgctgttgtgcatccag
accggtaagacgctctccgatcccacccgcttcaagttcgacggcgacggctactacctc
aagtcggcccgggagatgcgcgagcagtgggaccgcgaggtgcccgacgcgtgcgacaac
acgttgctcatcgccgagcgtgtgcagtcctacgacgaagtgtgggcccaccgcgaccgg
atgccggtcttcccggtgccggaaggggagacacaggcgagctggttgcacaaggaggtc
atgcgcggcctcgaccggcgcttcccggccggcccgccccgcgagtacgtcgagcgcgcc
gagtacgagatcacggtcatcaaccagatgggctttccggcgtacttcctcgtcgtcggt
gacctgatcaaccacgcccgcgaggtcggtatccgcgtcggacccggtcgtggttcggcc
gccggttcgctcgtcgcctacgcgatgggtatcaccaacatcgacccgatcccgcacggt
ctgctgttcgagcggttcctcaatcccgaacgtgtgtcgatgcccgatatcgatatcgac
ttcgacgatcgtcgccgcggggagatggtgcggtacgccaccgagcggtggggcaacgac
aaggtcgcccaggtcatcacgttcggcaccatcaagaccaaggccgcgatcaaggactcc
gcgcgggtgcagttcggtcagcccggtttcgcgatcgccgatcagatcaccaaggcgctg
ccgccgccgatcatggccaaggacattccggtctcgggcatcaccgatccgagtcacgag
cggtacaaggaggccgccgaggtccgtcagctgatcgagtccaacccggacatcaagaag
atctacgacaccgcgctcggcctcgagggcctgatccgcaatgcgggcgtgcatgcgtgc
gcggtgatcatgtcgtccgagccgctcatggatgcgatcccgctgtggaagcgcgcgcag
gacggcgcgatcatcaccggctgggactatccgtcctgcgaggccatcggcctgctgaag
atggacttcctcggtctgcgcaatctcactgtcatcggcgacgcgatcgagaacatcaag
gtcaatcgcgggatcgatctcgacctcgacaccctgccgctggaggatccggcgacctac
gaactgctcgcgcgcggcgacacgctcggcgtgttccagctcgacggcagcgccatgcgc
gacctgctgcgccgcatgcagcccaccggcttcgaggacatcgtcgccgtgctcgcgctg
taccgccccggcccgatgggcatgaacgcgcacaacgactacgccgaccggaagaacggg
cggcaagaggtcaagccgatccaccccgaactcgaggaaccgctgaaggacatcctcgcc
gacacctacggcctgatcgtctaccaggagcagatcatgcagatcgctcagaaggtggcc
gggtactccctcgggcaggccgacctgctgcgtcgcgcgatgggcaagaagaagaaggag
atcctcgacgaggcctacgacggcttcgcgcagggcatgaaggacaacggcttctcgcag
gcggcgatcacggcgctgtgggacaccgttctgcccttcgccggttacgcgttcaacaag
tcgcacgccgccggctacggcctcgtgtcgttctggaccgcctacctcaaggcgaactat
ccggccgagtacatggccgggctgctcacctccgtcggcgacgacaaggacaaggccgcg
gtctacctgtccgactgccgcaagatgggcatcaccgtactgcccccggacgtcaacgag
tcgcacaccaacttcatgtcggtgggtgaggacatccggttcggcctcggcgcggtccgc
aacgtgggtgcgaacgtggtcgcctcgatcatcaagggccgggaggagaaaggccgctac
accgacttctccgactatctcaacaagatcgacaccgtcgcatgctcgaagaaggtcacc
gaatccctcatcaaggcaggagctttcgactcgctcgaacacccgcgtaagggattgatg
ctcgtccacgccgacgcgatcgatgcggtgatgagcacgaagaaggccgaggcgatcggc
cagttcgacctgttcggcggggccgacgccgacgagtccgtcgccgcggtgttcaacgtc
cgtatccccgaggaggaatgggacaccaagcatcttctcgctctcgaacgggagatgctc
ggtctctacgtctccgggcacccgctcaacggcgtcgaacacgtcctcgcgtcccaagcc
gacacccagatcccggcgatcctcgaaggcgcgctcaaggacggcacccaggtcaccgtc
ggcggcatcctcgcctccgtgaaccgccgcatcaacaagaacggtctcgcctgggcgtcc
gcgcagctcgaggacctcacaggtggcatcgaggtgctgttcttcccgcagtcctacgcc
gtctacggtatggacgtggtggaggactcggtggtcctcgtcaaggcccgggtgtccatc
cgcgacgaccggatctccctgatcgccaacgatctcgtcgtccccgacctgtcgcagatc
ggggtggcgaagccggtctcggtgtccatgcccacccggttgtgcacccccgacaaggtc
ggtgccctcaagaacgtgctgacgcgtcatcccggttcgtccgacgtgcatgtgcggctc
atcaccggcagcaaggtcacggttctcaagctcgacgacagtctgcgggtcgaagcgtcg
tcggcgctcatgggcgacctcaaggcgctgctcgggccgggttgcctggctacctag
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