Rhodococcus gordoniae: NMQ04_12815
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Entry
NMQ04_12815 CDS
T08682
Name
(GenBank) DEDD exonuclease domain-containing protein
KO
K02342
DNA polymerase III subunit epsilon [EC:
2.7.7.7
]
Organism
rgor
Rhodococcus gordoniae
Pathway
rgor03030
DNA replication
rgor03430
Mismatch repair
rgor03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rgor00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NMQ04_12815
03430 Mismatch repair
NMQ04_12815
03440 Homologous recombination
NMQ04_12815
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rgor03032
]
NMQ04_12815
03400 DNA repair and recombination proteins [BR:
rgor03400
]
NMQ04_12815
Enzymes [BR:
rgor01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
NMQ04_12815
DNA replication proteins [BR:
rgor03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
NMQ04_12815
DNA repair and recombination proteins [BR:
rgor03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
NMQ04_12815
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
Rv2179c-like
GIY-YIG
UVR
DEDDh_C
Motif
Other DBs
NCBI-ProteinID:
UTT47171
LinkDB
All DBs
Position
2766759..2768507
Genome browser
AA seq
582 aa
AA seq
DB search
MTSPQPSALGVQLGFDELDTPLRDTTFVVVDLETTGGKAAEDAITEIGAVKIRAGEVLGE
FATLVDPGRPIPPYIVQLTGITTAMVYAAPRIEEVLPAFLEFASGSVLVAHNAGFDVGFL
QAAAARCRLAWPRFQVLCTVKLARRVLGRDEAPSVKLSALAELFRVSTVPTHRALDDARA
TVDVLHALIERVGNQGVHSLTELRDYMPVVTAEQRAKRALAAHLPRKPGVYMFRGPSDEV
LYVGTAVDLHRRVRTYFTGSETRPRLREMVALTTRIDHVECAHGLEAGVRELRLIAAHTP
PYNRRSKYPMRGWWIVLTDEAFPRLAVSRTPGPDAIGPFSVRADAADVAALLAQMCGLRT
CTRRIGRTARHGDRCPPVAVGGCAAARFGVQDASAYATQVEGVRAVVRGLADDAVEAMHE
HLDTLVRDQLFENAARLRDRLAAALVALRRTQRLASLAAVDELVAARPRAEGGWEFAVIR
AGRLASAGVAPRGVRPMPVVEAIVAGAETVRPSPGPLRGASPEEIGLVARWLDGEGTRIV
RASRGWCEPTRGAGRWSAWAELAREARAVRRLLSADSSHRLG
NT seq
1749 nt
NT seq
+upstream
nt +downstream
nt
atgacctcgccgcaaccatcggccctcggcgtgcaactgggtttcgacgagctcgacaca
cccctgcgcgacaccaccttcgtcgtcgtcgacctcgagacgaccggcgggaaggcagcc
gaggacgccatcaccgagatcggtgcggtgaagatccgtgccggcgaggtgctcggcgag
ttcgcgaccctcgtcgatcccgggcgtcccattcctccgtacatcgtgcaactcaccggc
atcaccactgcgatggtctacgcggcccccaggatcgaggaggtgctgcccgccttcctc
gagttcgcgtccggatcggtgctcgtcgcgcacaacgccggtttcgacgtcggatttctc
caggcggctgccgcccggtgccggctggcatggccccgcttccaggtgctgtgcaccgtc
aagctggcccgtcgcgtcctcgggcgcgacgaggcgccgtcggtgaagctctccgcgctg
gccgagctgttcagggtctccaccgtgcccacccaccgcgcgctcgacgacgcacgggcc
accgtggacgtgctgcacgccctcatcgaacgagtcggcaaccagggggtccacagcctc
accgagttgcgcgactacatgccggtggtcaccgccgagcaacgggccaaacgcgcactc
gccgcacaccttccacgcaagcccggtgtctacatgttccgggggccgtccgacgaggtg
ttgtacgtcggcacggcggtcgacctgcaccggcgcgtccgtacctatttcacgggctcc
gagacgcggccgcggctgcgggagatggtcgcgctcaccactcgcatcgatcatgtcgaa
tgcgcccacgggctcgaggccggcgtccgcgaactgcggctgatcgccgcacacacccct
ccgtacaaccgccggtcgaagtatccgatgcgcggctggtggatcgtcctcaccgacgag
gcgtttccgcgcctcgctgtgagccgcactcccggacccgacgcgatcggcccgttctcg
gtacgcgccgacgccgcggacgtcgcggcgctgctcgcgcagatgtgtggtctgcgcacg
tgcacacgcaggatcggccgcacggcccgtcacggcgaccgttgcccgcccgtcgccgtc
gggggctgcgcagcggcgcgcttcggggtccaggacgcctccgcctatgcaacccaggtc
gagggcgtgcgcgcggtcgtccgcggcctcgccgacgatgccgtcgaggcgatgcacgag
cacctcgacaccctcgtacgcgaccagctgttcgagaatgccgcccggctgcgcgaccgg
ctcgccgccgccctcgtcgcgctgcggcgcacccaacgcctggcttcgctggcggccgtc
gacgaactcgtcgccgcgcgtccgcgcgccgagggcgggtgggagttcgcggtgatccgc
gcaggccggctcgcgtccgccggcgtggcgccgcgcggcgtgcgtccgatgcccgtcgtg
gaggcgatcgtcgccggtgccgagacggtgcggccgtcaccgggaccgctgcgcggcgcg
tccccggaggagatcggtctggtcgcgcgatggctcgacggtgagggcacccgcatcgtc
cgtgcgagccggggctggtgcgagccgacccgaggtgcgggccgatggagtgcgtgggcc
gaactcgcgcgtgaggcccgcgcggtccgcaggctcctctccgcggactcgtcccaccgc
ttaggctga
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