Rhodococcus gordoniae: NMQ04_13430
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Entry
NMQ04_13430 CDS
T08682
Symbol
holA
Name
(GenBank) DNA polymerase III subunit delta
KO
K02340
DNA polymerase III subunit delta [EC:
2.7.7.7
]
Organism
rgor
Rhodococcus gordoniae
Pathway
rgor03030
DNA replication
rgor03430
Mismatch repair
rgor03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rgor00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NMQ04_13430 (holA)
03430 Mismatch repair
NMQ04_13430 (holA)
03440 Homologous recombination
NMQ04_13430 (holA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rgor03032
]
NMQ04_13430 (holA)
03400 DNA repair and recombination proteins [BR:
rgor03400
]
NMQ04_13430 (holA)
Enzymes [BR:
rgor01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
NMQ04_13430 (holA)
DNA replication proteins [BR:
rgor03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
NMQ04_13430 (holA)
DNA repair and recombination proteins [BR:
rgor03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
NMQ04_13430 (holA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_delta_C
DNA_pol3_delta
DNA_pol3_gamma3
Motif
Other DBs
NCBI-ProteinID:
UTT47281
LinkDB
All DBs
Position
complement(2890720..2891691)
Genome browser
AA seq
323 aa
AA seq
DB search
MSDASLHLVLGEEELLVDRAVAQIVSDVRTRSDTPGDLPVSRLRAGDAGVPELAELLSPS
LFAEERIVILESTADAGKDAAALILDVAADPPPGVTLVILHSGGGRTKTMVPALRKCGAE
EHMCAAPAKAGEKAAWVRTFVHKEFQAAGVRVSGDVEQLVIEAVGSDLRELAAACGQLVA
DTGGKIDAAAVRRYYSGKAEVSGFDVAEKAVAGDTAGALEALRWAMHRGVAHVLLADALA
DAVHTIARVGSAGRGDPFSLASSLGMPPWKVKKAQAQARTWAPASIGTALTVVAALNADV
KGAAADPDYALEHAVRVIAQLAA
NT seq
972 nt
NT seq
+upstream
nt +downstream
nt
gtgagcgacgcgtccctgcatctggtcctcggtgaggaagaactgctcgtcgaccgtgct
gtcgcgcagatcgtgtccgacgtccgcacgcgcagcgacactccgggcgatctaccggtc
tcccggctccgcgcgggcgacgccggtgtccccgaactggccgagctgctgagcccgtcg
ctgttcgccgaggagcgcatcgtgatcctcgaatccaccgccgacgccgggaaggacgcc
gcggcgctcatcctcgacgtcgcggccgatccgcccccgggcgtgacgctggtgatcctc
cacagcggtgggggccgcaccaagacgatggtgcccgcgctccgcaagtgcggcgccgag
gaacacatgtgtgccgctcccgcgaaagcgggggagaaggccgcctgggtgcgcacgttc
gtccacaaggagttccaggccgcgggcgtacgggtctccggcgacgtcgaacagctcgtc
atcgaagcagtgggatccgacctccgcgaactcgctgccgcgtgcggccagctcgtggcc
gacacgggcggcaagatcgacgccgcagccgtgcggcgctactactccggcaaggccgag
gtgtcgggattcgatgtggccgagaaggccgtggccggcgacaccgccggagcgctcgaa
gcgctgcgatgggcgatgcaccgcggcgtcgcccacgtattgctcgccgatgccctcgcc
gatgccgttcacaccatcgcccgtgtcggctcggccggtcggggcgacccgttctcactc
gcctcgtcgctcggcatgccgccgtggaaggtcaagaaggctcaggcccaagcgcggacg
tgggcgccggcgtccatcggcacggcgctcacggtggtggccgctctcaacgccgacgtc
aaaggggcggcggccgatccggattacgccctcgaacacgccgtgcgggtcatcgcgcag
ttggcggcctga
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