Rhodococcus gordoniae: NMQ04_14170
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Entry
NMQ04_14170 CDS
T08682
Name
(GenBank) DEAD/DEAH box helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
rgor
Rhodococcus gordoniae
Pathway
rgor03420
Nucleotide excision repair
rgor03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rgor00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
NMQ04_14170
03430 Mismatch repair
NMQ04_14170
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rgor03400
]
NMQ04_14170
Enzymes [BR:
rgor01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
NMQ04_14170
DNA repair and recombination proteins [BR:
rgor03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
NMQ04_14170
MMR (mismatch excision repair)
Other MMR factors
NMQ04_14170
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
PDDEXK_1
AAA_19
UvrD_C_2
AAA_30
DEAD
Motif
Other DBs
NCBI-ProteinID:
UTT47411
LinkDB
All DBs
Position
complement(3053004..3056375)
Genome browser
AA seq
1123 aa
AA seq
DB search
MNAPRVSATRLADALGQLPPTTEQAAVIEAPPGPMLVVAGAGAGKTETMAARVVWLVANG
IVEPEQVLGLTFTRKAAQQLTARIRARLAKLAGSALLRDLDPSGGLRARILGSEPEVSTY
HAYAGRLLTEHGLLLPIEPSATLLSETELWQVAHRVVSSWDGELDTDRNPASVTEAVLAL
SGQLAEHLVEPDRLRAAHVELEQLVHTLPPGPGQRGAPSKTLLGYLDTQHARLQLLPLVE
RLSETLRREGALDFGSQMSLAARVARDHPEVGAGERSRFRAVLLDEYQDTGHAQRVLLAA
LFGGGADPGLAVTAVGDPMQSIYGWRGASAANLPRFASDFPASDDGPAPTRELLTSWRNP
PQALELANVSSEPLRDRGVPVSRLRPRPDAAAGDVRLALHPDVATERDWVADRIAAEYAA
AREDGRTPPTAAVLVRRNADAAPIAEALRARDLPVEVVGIGGLLHTPEVADVLAMLRLAA
DPLAGSAAVRVLTGARWQLGAADLKALWERAQELAIAGRWGVTGAVTDPGALEDALDSAL
PGEHADQAGLADAISDPGDSHRYSKFGYARIVALGRELTSLRERLGQPLTELVAEVERVL
GIGIETEARVGSRRGVAGREHLDAFAGVVASYAGRTNATLPGLLTYLAAAEEIEQGLAPG
EVEVDPDRVQVLTVHSAKGLEWEVVAVPHVAAGVFPSSTAATTWLGSTSELPPHLRGDRV
LPDDDPGSTDGVPVLDLGDVADRKMLERAVDAHKDALKRRKLDEDRRLFYVALTRTERAL
FVSGHHWADTGSEPKGPSPFLEELHGIVTARPELGSIDHWAPEPEPEQENPLTASPRSAL
WPRDPLGARRGDVERGAALVLAEFDRTDLPTGYDDDPDEWATDVDALLAEREQRAEQSAE
VVLPAQLSVSQLVDLATDPDALAARLRRPLPFRPNPLARRGTAFHAWLERRFGATRLLDL
DELPGADDEDGDDSHFDRLQEAFLRSKWASRNPVEVEVPFETALAGTVIRGRIDAVFEDP
DGGWTVIDWKTGAEPEGDKLATVGVQLAAYRLAWAQLMAARTERLTGRPAELPLHKVRAA
FHYVRTGRTVAPDELPGAAMLERLVLEAGNLRRESTADSEAED
NT seq
3372 nt
NT seq
+upstream
nt +downstream
nt
atgaatgcaccacgggtgagtgcgacgcgcctcgcggatgcactgggacagctgcccccc
acgacggagcaggcggcggtcatcgaggcgccgcccgggccgatgctggtcgtggcgggc
gccggtgccggcaagaccgagacgatggcggcccgcgtggtgtggctcgtcgcgaacggg
atcgtcgaacccgagcaggtgctgggcctgaccttcacccgcaaggccgcgcagcagctc
acagcccgcatccgggcgcgactcgccaagctcgccgggtcggcgctgctccgcgacctc
gacccgagcggtggtttgcgtgcccggatcctcggcagcgaacccgaggtgagcacgtat
cacgcgtacgccggtcgcctgctcaccgagcacggtctgctgctgcccatcgaaccgtcg
gcgaccctgctgtccgagaccgagctgtggcaggttgcgcaccgcgtggtcagctcgtgg
gacggcgagctcgacaccgaccgcaatcccgcgtcggtgaccgaggccgtgctcgccctg
tccggtcagctcgccgaacacctcgtcgaaccggatcggctgcgcgccgcccacgtcgaa
ctcgaacagctcgtgcacaccctcccgcccggcccggggcagcggggagcgccgtcgaag
accctgctcggctacctcgacacccagcacgcgcgtctgcagttgcttccgctcgtcgaa
cggctgtccgagaccctgcgtcgcgaaggcgccctcgacttcggcagccagatgtcgctc
gccgcgcgggtcgcccgcgaccatcccgaggtgggcgccggcgaacggagccggttccgg
gccgtgctgctcgacgagtaccaggacaccgggcacgcccagcgcgtcctgctcgccgcg
ttgttcggcggcggcgccgatccgggcctcgcggtgaccgcggtgggcgatcccatgcag
tccatctacggctggcgcggggcgtcggccgccaacctgccgcgcttcgcgagcgacttc
ccggcgtccgacgacgggccggcgcccacccgcgaactgctcaccagctggcgcaacccg
ccgcaggccctcgaactggcgaacgtctcgtccgaacccctgcgcgatcggggggtgccg
gtcagccggttgcgtccccgtcccgacgcggccgccggcgacgtccggctcgcgctgcac
cccgatgtcgcgaccgaacgcgactgggtggccgaccggatcgccgccgagtacgccgct
gcacgcgaggacgggcggacaccgccgacggcagcggtcctggtccgccgcaacgccgac
gcggcgccgatcgccgaggcgctgcgcgcccgcgacctgccggtggaggtcgtcggcatc
ggcggactactgcacacaccggaggtcgccgatgtgctcgcgatgttgcggctggcggcg
gatccgctcgccggaagcgcggcggtgcgggtgctcaccggtgcccgctggcaactcggg
gccgccgacctgaaggcactgtgggagcgcgctcaggaactggccatcgcgggccgctgg
ggtgtcaccggtgcggtgaccgaccccggcgccctcgaggacgcactcgattcggcactg
cccggcgaacatgccgaccaggccggactcgccgacgcgatctccgatcccggcgacagc
caccgttactcgaagttcggatacgcgcgcatcgtcgcgctgggccgcgagctgacctct
ctgcgggagcggctcggtcagcccctcaccgaactggtggccgaggtcgagcgcgtgctc
ggtatcggcatcgagaccgaggcccgcgtgggcagccggcgcggcgtcgccggccgcgaa
catctcgacgcgttcgcaggggtggtcgcgtcctatgcggggcgcaccaacgcgaccctt
cccggtctgctgacctacctggccgccgcggaggagatcgagcagggtctcgcgcccggt
gaggtggaggtcgatcccgatcgcgtgcaggtcctcaccgtccactcggcgaaaggcctc
gaatgggaggtcgtcgcggtcccgcacgtcgcggcgggagtcttcccgtcgtccacggcc
gccacgacctggctcggatccacgagcgaactgcccccgcatctgcgtggcgatcgggtg
ctgcccgacgacgatccggggagcaccgacggtgtgcccgtgctcgatctcggcgacgtc
gccgatcgcaagatgctcgagcgggccgtcgacgcccacaaggacgccctcaaacggcgc
aagctcgacgaggaccgccgtctgttctacgtcgccctcacccgcaccgaacgagccctg
ttcgtctccggccatcactgggccgacaccggctccgaaccgaagggaccctcgcccttc
ctcgaggaactgcacgggatcgtcacggcgcgacccgagctcggttcgatcgatcattgg
gcgccggaacccgaacccgagcaggagaaccccctcacggcgtcaccgcgcagcgcgctg
tggccgcgcgacccgctcggcgcccggcgcggcgacgtcgaacgcggcgcagcgctcgtc
ctcgccgagttcgaccggaccgacctcccgaccgggtacgacgacgatcccgacgagtgg
gccaccgacgtcgacgcgttgctggccgaacgcgaacagcgcgccgagcagagcgccgaa
gtggtgctgcccgcgcagctgtccgtcagtcagctcgtcgacctcgccaccgaccccgat
gccctcgcggcccggttgcgccgtccgttgccgttccggcccaatccgctcgcgcgtcgc
ggcacggccttccacgcgtggctcgagcgcaggttcggcgcgacgcgcctgctcgacctc
gacgagcttcccggcgccgacgacgaggacggcgacgattcgcacttcgaccggctccag
gaagcgttcctgcggtcgaagtgggcgtcgcgcaaccccgtcgaggtggaggtgccgttc
gaaaccgctctggccggcaccgtcatccgcggacgcatcgacgcggtcttcgaggatccg
gacggaggctggacggtcatcgactggaagaccggtgccgaaccggaaggggacaagctc
gccacggtgggagttcagctcgccgcctaccgcctcgcctgggcgcagctgatggcggca
cgcaccgaacggctcaccggccgaccggccgaactgccgctgcacaaggtccgagcggct
ttccactacgtccgcaccggacgcaccgttgcacccgacgagctgcccggcgcggcgatg
ctcgaacggctcgttctcgaggcggggaacctgcggcgcgaatccaccgcggattccgag
gcggaggactag
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