Rhodococcus gordoniae: NMQ04_15760
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Entry
NMQ04_15760 CDS
T08682
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
rgor
Rhodococcus gordoniae
Pathway
rgor03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
rgor00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
NMQ04_15760
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rgor03021
]
NMQ04_15760
03400 DNA repair and recombination proteins [BR:
rgor03400
]
NMQ04_15760
Enzymes [BR:
rgor01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
NMQ04_15760
Transcription machinery [BR:
rgor03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
NMQ04_15760
DNA repair and recombination proteins [BR:
rgor03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
NMQ04_15760
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
UTT47695
LinkDB
All DBs
Position
complement(3441902..3445873)
Genome browser
AA seq
1323 aa
AA seq
DB search
MLDVNFFDELRIGLATAEDIRNWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLEKIIYFAAYVITSVDDELRHNELSTLEAEMEVEKKSVADQRDADLEARAQKLEAD
LAELEAEGAKSDVRRKVKDGGEREMRQLRDRAQRELDRLDEIWTTFTKLKPKDLIVDEMI
YRELQDRYGEYFTGAMGAEAIQKLIENFDIDAEAESLRETIRSGKGQKKLRALKRLKVVA
AFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL
GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK
RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR
PQVWDVLEEVINEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCEAFNADFDGDQ
MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLFHLTRLVEDAPGAYT
AATADEPEQGVYSSPAEAQMAVDRGVLSVQAPIKVRLTQLRPPRDVENELFPEGWKYGEP
WTAQTTLGRVLFNELLPTNYAFVNDIMPKKRQAAIINDLAERYPMIVVAQTVDKLKDAGF
YWATRSGVTISMADVLVPPEKKDILERYETQADAIQRQYDRGKLSEDERRDSLVKLWQEA
TEEVGQVMEAHYPDDNPIPTIVKSGAAGNMTQIRSLAGMKGLVTNPKGEFIPRPIKSSFR
EGLTVAEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREVDCGTPRGIEMTI
AELARDATGQPTGELVRDAHIETSTYARTLATDAVDANGNVVVERGSDLGDPAIEALLEA
GIQKVKVRSVLTCDTGTGVCATCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTF
HQGGVGEDITGGLPRVQELFEARVPKGKAPIADVSGRIRLEDDDRFYKITIVPDDGGEEV
VYDKLSKRQRLHVIRKADGTEGVLSDGDHVEVGQQLLEGSADPHEVLRVMGPRQVQVHLV
HEVQEVYRSQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLVERSEFEAANRRVVQ
EGGEPAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLIGLKENVIIG
KLIPAGTGINKYRNIEVQPTEEARAAAYAIPAYDDQYYSPDGFGQNTGAAVPLDDYGYSN
DYR
NT seq
3972 nt
NT seq
+upstream
nt +downstream
nt
gtgctcgacgtcaacttcttcgatgaactccggatcggcctggccaccgccgaggacatc
cgtaactggtcgtacggcgaggtcaagaagcccgagaccatcaactaccgcacgctcaag
cccgagaaggacggcttgttctgcgagaagatcttcggtcccacccgggactgggagtgc
tactgcggcaagtacaagcgtgtccgcttcaagggcatcatctgcgagcgctgcggcgtc
gaggtgacccgcgccaaggtccgccgcgagcgcatgggtcacatcgagctcgccgctccg
gtgacccacatctggtacttcaagggtgtgccgagccgtctcggctacctgctcgacctc
gcgccgaaggatctcgagaagatcatctacttcgccgcgtacgtcatcacgtccgtcgac
gacgagctgcgccacaacgagctctccactctcgaagccgagatggaggtcgagaagaag
tcggtcgccgatcagcgcgacgccgacctcgaggcccgggcgcagaagctcgaagccgac
ctcgccgaactcgaggccgagggcgccaagtccgacgtccgccgcaaggtcaaggacggc
ggcgagcgcgagatgcgtcagctccgcgaccgcgcgcagcgcgagctcgaccgtctcgac
gagatctggacgaccttcacgaagctgaagccgaaggatctgatcgtcgacgagatgatc
taccgcgagctccaggaccgctacggcgagtacttcaccggtgccatgggtgccgaggcg
atccagaagctcatcgagaacttcgacatcgacgccgaggccgagtcgctgcgcgagacc
atccgcagcggcaagggccagaagaagctgcgtgctctcaagcgactgaaggtcgtggcg
gcgttccagcagtccggcaactcgcccatgggcatggtgctcgacgccgtgccggtgatc
ccgccggaactgcgtccgatggtgcagctcgacggtggccgcttcgcgacctccgacctc
aacgacctgtaccgccgcgtcatcaaccgcaacaaccgcctcaagcgactgatcgacctc
ggcgctcccgagatcatcgtcaacaacgagaagcggatgctgcaggagtcggtcgacgcc
ctgttcgacaacggccgtcgtggccggccggtcaccggtcccggtaaccgtccgctgaag
tcgctgtccgatctgctcaagggcaagcagggtcgcttccgtcagaacctgctcggcaag
cgcgtcgactactcgggccgttcggtcatcgtcgtcggtccgcagctcaagctgcaccag
tgcggtctgccgaagctcatggcgctcgagctgttcaagccgttcgtgatgaagcgtctc
gtcgacctcaaccatgcgcagaacatcaagtccgcgaagcgcatggtcgagcgtcagcgc
ccgcaggtgtgggacgtcctcgaagaggtcatcaacgagcacccggttctgctgaaccgt
gctcccaccctgcaccgcctcggtatccaggcgttcgagccgcagctcgtcgagggcaag
gccatccagctgcaccccctcgtgtgtgaggccttcaacgccgacttcgacggcgaccag
atggccgtgcacctcccgctgtcggcggaggcgcaggccgaggcccgcatcctgatgctg
tcgtcgaacaacatcctgtcgccggcatcgggccgcccgctcgccatgccgcgtctggac
atggtgacgggtctgttccacctgacccgtctggtcgaggacgcccccggtgcctacacg
gccgcgaccgccgacgagcccgagcagggcgtctactcgtcgccggccgaggcccagatg
gccgtcgaccgcggtgtgctgtcggtccaggctccgatcaaggtgcgtctgacccagctg
cgtccgccgcgcgacgtcgagaacgagctgttcccggagggctggaagtacggtgagccg
tggaccgcgcagaccaccctcggtcgcgtgctgttcaacgagctgctgccgacgaactac
gcgttcgtcaacgacatcatgccgaagaagcgccaggccgcgatcatcaacgacctggcc
gagcggtacccgatgatcgtcgtcgcgcagaccgtcgacaagctcaaggacgccggcttc
tactgggccacgcgttcgggtgtcaccatctcgatggcggacgtgctcgttccgccggag
aagaaggacatcctcgagcggtacgagacccaggccgatgccatccagcggcagtacgac
cgaggcaagctctcggaggacgagcgtcgcgattcgctcgtcaagctgtggcaggaagcg
accgaagaggtcggtcaggtcatggaggcgcactacccggacgacaacccgatccccacg
atcgtcaagtccggcgctgcgggcaacatgacccagatccgctcgctggcaggcatgaag
ggtctggtgacgaacccgaagggcgagttcatcccgcgcccgatcaagtcctccttccgt
gagggcctgaccgtcgccgagtacttcatcaacacgcacggcgcgcgtaagggtctggcc
gataccgctctgcgtaccgccgactcgggttacctgacccgtcgtctggtggacgtctcg
caggacgtcatcgtccgcgaggtcgactgcggcacgccgcgcggcatcgagatgaccatc
gccgagctcgcccgcgacgcgaccggtcagccgaccggcgagctcgtgcgcgacgctcac
atcgagaccagcacctacgcccgtacgctggcgacggacgcggtcgacgcgaacggcaac
gtcgtcgtcgagcgtggttccgacctcggcgacccggcgatcgaggcgctgctcgaggcc
ggcatccagaaggtcaaggtccgctcggtcctgacctgcgacaccggcaccggcgtgtgc
gcgacctgctacggccgttcgatggcgacgggcaagctcgtcgacatcggcgaggccgtc
ggtatcgtcgcagcccagtcgatcggtgagcccggtacgcagctgacgatgcgtaccttc
caccagggtggcgtcggtgaggacatcaccggtggtctgccgcgtgtccaggagctgttc
gaggcccgcgtcccgaagggcaaggccccgatcgccgacgtctccggccgtatccgtctc
gaggacgacgatcgcttctacaagatcacgatcgtccccgacgacggtggcgaggaggtc
gtgtacgacaagctgtccaagcgtcagcgtctgcacgtcatccgcaaggccgacggcacc
gagggcgttctctcggacggcgaccacgtggaggtcggtcagcagctgctcgagggctct
gccgatccgcacgaggtgctgcgcgtgatgggcccgcgtcaggttcaggtccacctggtc
cacgaggtccaggaggtctaccggagccagggcgtgtcgatccacgacaagcacatcgag
gtcatcgtgcgccagatgctgcgtcgcgtgacgatcatcgattcgggctcgacggagttc
ctgcccggttcgctcgtcgagcgcagcgagttcgaggctgcaaaccgtcgtgtggtccag
gagggtggcgagccggctgccggccgtccggtcctcatgggcatcacgaaggcctcgctg
gccaccgactcgtggctgtcggcggcgtccttccaggagaccactcgagtgctgaccgat
gcggcgatcaactgccgctcggacaagctgatcggtctcaaggagaacgtgatcatcggc
aagctgatccccgccggtaccggtatcaacaagtaccggaacatcgaggtccagccgacc
gaggaggcccgcgcggccgcgtacgccatcccggcgtacgacgaccagtactactcgccg
gacggcttcggccagaacaccggtgctgcagtgccgctggacgattacggttactccaac
gactaccggtag
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