Rhizobium grahamii: FZ934_04380
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Entry
FZ934_04380 CDS
T06285
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
rgr
Rhizobium grahamii
Pathway
rgr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rgr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FZ934_04380
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rgr03019
]
FZ934_04380
03009 Ribosome biogenesis [BR:
rgr03009
]
FZ934_04380
Enzymes [BR:
rgr01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
FZ934_04380
Messenger RNA biogenesis [BR:
rgr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
FZ934_04380
Ribosome biogenesis [BR:
rgr03009
]
Prokaryotic type
rRNA processing factors
FZ934_04380
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
RhlB
zf-CCHC
Motif
Other DBs
NCBI-ProteinID:
QFY59735
UniProt:
A0A5Q0C3A8
LinkDB
All DBs
Position
complement(872398..875229)
Genome browser
AA seq
943 aa
AA seq
DB search
MADKMLIDASHEEETRVVVVRGNRIEEFDFESQHKKQIRGNIYLAKVTRVEPSLQAAFVD
YGGNRHGFLAFAEIHPDYYQIPLADRQALLRAEAEDHRRDDDVEHIETATVDLSTQDQPD
IGIVPAAEPTNEATVEVVETAEVVEAVEEAPAKKAKPRRSRKKAAPAVAEEAVAEEASNS
ESPATADDEDEGSSGGKMAAMVETDSISEDVDTRRRNDDDDDDDHEEEVIESVGAEDAME
EVPDRAQRKPRKQYRIQEVIKRRQILLVQVAKEERGNKGAALTTYLSLAGRYSVLMPNTA
RGGGISRKITSPQDRKRLKEIARMLEVPQGMGVILRTAGANRTKVEVKRDFEYLMRLWEN
VRTLTLQSTAPCLVYEEGSLIKRSIRDLYNKDIGEIIVAGEEGYREAKDFMKMLMPSHAK
VVQPYRDIHPIFSRSGIEAQLDRMLQPQVTLKSGGYLIMNQTEALVSIDVNSGRSTREHS
IEDTALQTNLEAAEEIARQLRLRDLAGLVVIDFIDMEEKRNNRAVEKKLKECLKNDRARI
QVGRISHFGLLEMSRQRIRASVLESTTQVCSHCGGTGHVRSQSSVALHVLRGIEEYLLKN
TTHDITVRTTPDIALYLLNHKRQTIIDYEARFGVAIIIDADGAVGAQHFAIDRGEAVENP
VKIETLFNFAAIPDDDDDDIVIEVDEEEDEELEEKPAAAERPAARAEGEGDGRKRKRRRR
RRGRNGNGEQQAASESASDQADAGDEGDDEDGAIEADAAAPATADEQADGDESQRRKRRR
RGKRGGRRNREENGEQSAEAGDEDEAATDAEETEVAEPVQATVAESIEVVAEEAVEPQTA
MAAVETAASVTEDVKPKRARRSRKASPVEEPVVEAAAEVAPAAEPETVEAAADLTASVEE
EAKPVRANRESNISSSEPTVKSTSTDGDGKPKKAGWWQRRGFF
NT seq
2832 nt
NT seq
+upstream
nt +downstream
nt
atggcagacaaaatgcttatcgacgcgtctcacgaggaagagacgcgcgtcgttgtcgtt
cgcgggaaccgcatagaagagttcgacttcgaatcacagcacaagaagcagattcgcggc
aacatctacctggcaaaggtgacgagggttgaaccctcgcttcaggccgcgttcgtcgat
tacggcggcaaccggcatggctttctggccttcgccgaaatccaccccgactactaccag
atccccctcgccgaccgtcaggcgcttctgcgcgctgaagccgaggaccatcgtcgcgat
gacgacgtcgagcacatcgagaccgcaacggtagatctttccacgcaggaccagcccgat
atcggtatcgttcctgctgccgagcccaccaacgaagcgactgtcgaggtggtagagacc
gccgaggttgtcgaagcggtggaagaggctccggccaagaaggcaaagccgcgccgcagt
cgcaagaaggctgcccctgcggttgccgaagaggcagtagcggaagaagcttccaacagc
gaatcgcccgcgaccgccgacgatgaggacgaaggctcctccggcggcaagatggccgcg
atggtcgaaaccgattcgatctccgaagacgtcgacacccgccgccgcaacgacgatgac
gacgatgacgaccacgaagaagaagtgatcgaatccgtcggcgccgaagatgcgatggaa
gaggttccggaccgggcccagcgcaagccgcgcaagcagtatcgcatccaggaagtcatc
aagcgccgccagatcctgctcgttcaggtcgccaaggaagagcgcggcaacaagggcgca
gcgctgacgacctatctgtcgctcgccggtcgctactccgttctgatgccgaacacggcg
cgtggtggcggcatttcccgcaagatcaccagcccgcaggaccgcaagcgcctgaaggaa
atcgcgcgcatgctcgaagtgccgcaaggcatgggtgtcattctgcgcaccgctggcgcg
aaccgtaccaaggtcgaggtcaagcgcgatttcgaatatctgatgcgcctgtgggagaac
gtccgcacgctgacgcttcaatcgacggcgccctgcctcgtctacgaggaaggttcgctc
atcaagcgctcgatccgcgacctctacaacaaggatatcggcgagatcatcgttgccggc
gaagaaggctatcgtgaagcaaaagacttcatgaagatgctaatgccgagccatgcgaag
gtcgtccagccgtatcgcgacatccacccgatcttctcgcgctcaggtatcgaagcacag
ctcgaccgcatgctgcagccgcaggtgacgctgaagtccggcggctacctgatcatgaac
cagacggaagcgctggtttcgatcgacgtcaactccggtcgctcgacgcgcgaacactcg
atcgaggacaccgctctccagaccaacctcgaagctgcggaagaaatcgctcgccagctt
cgcctgcgcgaccttgcgggtctcgtcgttatcgacttcatcgatatggaagagaagcgc
aacaaccgcgcggtcgaaaagaagctgaaggaatgcctgaagaacgaccgtgcgcgtatc
caggtcggtcgcatctcgcacttcggccttctggaaatgtcacgccagcgcatccgcgca
tcggttctcgaatcgacgacacaggtctgctcgcattgcggcggcaccggtcacgttcgc
tcgcagtcctccgttgcgctgcacgtgctgcgcggcatcgaggagtatctgctcaagaac
acgacgcacgacatcaccgtgcggacaacgcctgacatcgcgctctacctgttgaaccac
aagcgccagacgatcatcgactatgaagcccgcttcggcgtggccatcatcatcgatgcc
gatggcgcggtcggcgcgcagcatttcgcgatcgatcgcggcgaagccgtcgagaacccg
gtcaagatcgaaacccttttcaacttcgccgccatccctgacgatgacgacgatgacatc
gtgatcgaggttgacgaggaagaagacgaagaactcgaagagaagcccgcagccgccgaa
cgtccggcagcgcgcgccgaaggtgaaggcgatggtcgcaagcgcaagcgtcgccggcgt
cgtcgtggccgtaacggtaacggcgaacagcaggctgccagcgagtcggcctccgatcag
gcagacgctggcgacgagggtgatgacgaggacggcgcgatcgaagccgatgcagccgca
ccggctacagccgacgagcaggctgacggcgatgagagccagcgccgcaagcgccgccgc
cgcggaaagcgcggtggtcgtcgcaaccgcgaggaaaatggcgagcagtccgctgaggcc
ggcgatgaagacgaggccgcgaccgacgccgaggaaaccgaggtagcagaaccggtacag
gcgactgtggctgaatccatcgaggtcgttgccgaagaagctgtcgagccccagactgcc
atggctgctgtcgagacagcagcttccgtcaccgaagacgtcaagccgaagcgcgcacgg
cgcagccgcaaggcatcgccggtggaagagccggttgtcgaagccgctgccgaggtagct
cctgctgcggaaccggaaacggttgaagcggctgcggatctgacggcatccgtcgaagaa
gaagccaagccggtccgtgcaaaccgcgagtcgaacatctcctcatcggagccgaccgtg
aagtcgacgagcaccgatggcgacggcaagcccaagaaggctggctggtggcagcgccgc
ggcttcttctaa
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