Rhizobium grahamii: FZ934_05035
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Entry
FZ934_05035 CDS
T06285
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
rgr
Rhizobium grahamii
Pathway
rgr03030
DNA replication
rgr03430
Mismatch repair
rgr03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rgr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
FZ934_05035 (dnaE)
03430 Mismatch repair
FZ934_05035 (dnaE)
03440 Homologous recombination
FZ934_05035 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rgr03032
]
FZ934_05035 (dnaE)
03400 DNA repair and recombination proteins [BR:
rgr03400
]
FZ934_05035 (dnaE)
Enzymes [BR:
rgr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
FZ934_05035 (dnaE)
DNA replication proteins [BR:
rgr03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
FZ934_05035 (dnaE)
DNA repair and recombination proteins [BR:
rgr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
FZ934_05035 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DUF655
HROB
Motif
Other DBs
NCBI-ProteinID:
QFY59850
UniProt:
A0A5Q0C7A3
LinkDB
All DBs
Position
996584..1000081
Genome browser
AA seq
1165 aa
AA seq
DB search
MAGAEKDAESGFIGGTPGFVHLRVHSAYSLLEGALPLKKILYKASGDSQPAIAITDTNNL
FVALEFSQKAMDEGLQPIIGCQVSIDMEDGLETERRGGQQALVKFPSLVLLAATDAGYER
LVDLVSRAYLGGEGNGSILIRSSWLDEIGTDGLIALTGASTGPIDMAVKDGHTAQAEARL
MVLKRHFSDRLYVELQRHGTYDKRHEQKIIGLAYEHDLPLVATNEAFFPTREDYDAHDAL
MAVAHNAIVSDDTRFRLTPDHYLKSRAEMAKLFADLPEALENTIEIARRCSFILKTRKPI
LPRFTGATADPEEAEREEALELRRQAEEGLDSRLATLGMSAGYEEKDYRERLEFELSVIE
RMKFPGYFLIVADFIKWAKQHDIPVGPGRGSGAGSLVAYALTITDVDPLRFSLLFERFLN
PERVSMPDFDIDFCQDRREEVIRYVQRKYGREQVAQIITFGSLQARAALRDVGRVLEMPY
GQVDKICKLVPNNPANPTPLSKAIEEEPKLQEEADKEPVVARLLDIAQKIEGLYRHASTH
AAGIVIGDRPLSKLVPMYRDPRSDMPVTQFNMKWVEQAGLVKFDFLGLKTLTTLKVAVDF
VAKRGIKVDLASIPLDDKLTYEMLSRGETVGVFQVESAGMRKALIGMKPDCIEDIIALVA
LYRPGPMENIPTYNARKHGEEEVESIHPTIDYLLKETQGVIVYQEQVMQIAQVLSGYSLG
EADLLRRAMGKKIKAEMDQQRERFVVGAVKNGVSKPQADNIFELLAKFANYGFNKSHAAA
YAIVSYQTAYMKAHYPVEFLAASMTLDMSNTEKVNDFRQDAKRLEIEVIPPSVQTSFRHF
ETGDSRIYYALAALKGVGESAVDHIVEVRGDTPFASLEDFCLRIDPKQVNRRVLESLIFA
GAFDCFKIDRAQLSGGLDRIMGYAQRAQENKLSGQSDIFGSALSAGPEKISLPPFSPWLA
SEKLLKEFQVLGFYLTAHPLDSYNSVLQKMRVQTFADFSGAVKQGASNGRLAGTVISKQE
RKTRTGNKMGIIVFSDSSGQFEAVLFSEMLNQYRDVLEAGKSFVITATGEERPEGIGLRI
QTIQSLEEKSLQMQKALRVYVRDSGPLRAVAAHLNARGDGLVSFIVIKEEGKREVEVELP
QKYRITPEIAAALRAAPGVIDVELV
NT seq
3498 nt
NT seq
+upstream
nt +downstream
nt
atggcgggtgcggagaaagacgcggaaagcggtttcatcggcggtacgccgggcttcgtt
caccttcgggtccactcggcctactcgctgcttgagggcgcgctgccgctcaagaaaatc
ctctacaaggcatcgggcgacagccagccggcgatcgccatcaccgacaccaacaatctc
ttcgtcgccctcgagttttcacagaaggcgatggacgagggcttgcagccgatcatcggt
tgccaggtctcgatcgacatggaagacgggctggagacggaaaggcgcggcggccagcag
gcgctcgtcaagttcccgtctctcgtgctcttggcagccacggatgcgggctatgagcgg
ctcgtggatctcgtcagccgcgcttacctgggcggcgaggggaatggttcgattctcatt
cggtcttcgtggctggatgagatcgggacggacggtctgatcgccctgaccggcgcctcg
accggaccgatcgacatggcggtcaaggacggccacacggcgcaggccgaagcgcggctg
atggtgctgaagcgccatttcagtgatcgcctctatgtcgagctgcagcgccacggcacc
tatgacaagcgccacgagcagaagatcatcgggctcgcatacgagcatgacctgccgctg
gttgccaccaacgaagcctttttcccgacgcgtgaggactatgacgcgcacgacgccctg
atggctgtcgctcataacgccatcgtctcggatgatacgcgcttccgcctaacgcctgat
cactatctgaaaagccgcgccgaaatggcgaagctgtttgcggatctgccggaggcgctg
gaaaacaccatcgagatcgcccgccgctgctccttcatcctgaagacgcgcaagccgatc
ctgccccggttcaccggcgcgacggccgatcccgaggaagctgagcgcgaagaggcactc
gaactgcgccggcaggcggaggaggggctggacagccgccttgccacgctcggcatgtcg
gcgggctacgaggaaaaggactaccgcgaacgcctggaattcgaactcagcgttatcgag
cgtatgaagttcccaggctacttcctgatcgttgcggacttcatcaaatgggcaaagcag
catgacatccccgtcggcccgggccgtggctccggtgcagggtcgctggtcgcttacgct
ctgacgatcaccgacgtcgatccgctgcgtttctcgctgcttttcgaacgcttcctcaat
ccggaacgcgtctcgatgcccgacttcgatatcgacttctgccaggatcgccgcgaagag
gtgatccgctacgtgcagcgcaagtatggccgcgaacaggtcgcgcagatcatcactttc
ggttcgctacaggcgcgcgcggccctgcgcgacgtcggccgcgtgctggagatgccttac
gggcaggttgacaagatctgcaagctggtgccaaacaatccggccaacccgacgcccctg
tcgaaggcgatcgaggaagagccgaagctgcaggaggaagccgacaaggagcccgtcgtc
gctcgcctgctcgatatcgcccagaagatcgagggtctctaccgccacgcgtcgacccac
gctgccggtatcgtcatcggcgaccgcccgctgtcgaaactcgtcccgatgtaccgcgat
ccgcgctccgacatgccggtcacccagttcaacatgaagtgggtcgagcaggccggcctc
gtgaagttcgacttcctcggcctgaagacgctgacgacgttgaaggtcgccgtcgatttc
gtcgccaagcgcggcatcaaggtcgacctcgcctcgattccgctcgacgacaagctgacc
tacgagatgctctcgcgcggtgaaaccgtcggcgtgttccaggtggaaagcgcgggcatg
cgcaaggcgctgatcggcatgaagccggactgcatcgaggacatcatcgcgctcgtggcc
ctctatcgtccgggcccgatggaaaacatcccgacctacaacgcccgcaagcacggcgag
gaggaagtcgagtcgatccatccgacgatcgattacctgctgaaggaaacgcagggcgtt
atcgtctaccaggaacaggtcatgcagatcgcccaggtcctgtcgggctattcgcttggc
gaagccgaccttctgcgccgcgccatgggtaaaaagatcaaggcggagatggaccagcag
cgcgagcgcttcgtggtcggtgccgtgaagaacggcgtctcgaagccgcaggccgacaac
atcttcgaactgttggcaaagttcgccaactacggcttcaacaagtcgcacgccgcagcc
tacgcgatcgtctcctatcagaccgcctacatgaaggcgcactatccggtcgagttcctc
gcagcgtcgatgacgctcgatatgtcgaacaccgaaaaggtcaacgacttccgccaggac
gccaagcgcctcgagatcgaggtgatcccgccatcggtgcaaacctcgttccgccacttc
gaaaccggcgatagcaggatctattatgcactcgcggcgttgaagggggtcggtgaatcg
gccgtcgatcacatcgtcgaggttcgcggcgacacgccatttgcgagcctcgaggatttc
tgcctgcgcatcgatccgaagcaggtaaaccgccgcgtgttggaaagcctgattttcgcc
ggcgccttcgattgcttcaagatcgaccgcgcgcaactgtcaggcgggctcgaccgcatc
atgggctacgcccagcgtgcgcaggaaaacaagctgagcggccagtcggatatcttcggc
agcgccctgtcggcaggtcccgaaaagatctcgcttccaccgttttcgccgtggcttgcc
tcggaaaagctgctcaaggaattccaggtcctcggcttctacctgacggcgcatccgctg
gattcctataattcagtcctgcagaagatgcgggtgcagaccttcgccgatttctccggt
gccgtgaaacagggggcaagcaatggtcgcctcgcaggcaccgtcatctcgaagcaggaa
cgcaagacgcggacaggcaacaagatgggcattatcgtcttctcggattcgtcaggccag
ttcgaagctgtcctgttctccgaaatgctcaatcaatacagggacgttctggaagctgga
aaatcgttcgtgatcacggcgaccggggaagaacggcccgagggcatcggtcttcgcatc
cagacgatccagtctctggaggagaaatcgctccagatgcagaaggccttgcgtgtctac
gtccgcgattccggcccgctgcgcgctgtcgccgcccacctgaatgcgaggggggacggc
cttgtctccttcatcgtcatcaaggaggaaggaaagcgcgaagtggaggtagagctgccg
cagaaatatcgcatcacgcctgaaatcgccgccgccttgcgtgccgcgccaggtgtcatc
gacgtagagctggtttaa
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