Rhizobium grahamii: FZ934_05085
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Entry
FZ934_05085 CDS
T06285
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
rgr
Rhizobium grahamii
Pathway
rgr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rgr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FZ934_05085 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rgr03019
]
FZ934_05085 (rnr)
03016 Transfer RNA biogenesis [BR:
rgr03016
]
FZ934_05085 (rnr)
Enzymes [BR:
rgr01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
FZ934_05085 (rnr)
Messenger RNA biogenesis [BR:
rgr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
FZ934_05085 (rnr)
Transfer RNA biogenesis [BR:
rgr03016
]
Prokaryotic type
tRNA degradation factors
FZ934_05085 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
S1
HTH_IclR
FaeA
Motif
Other DBs
NCBI-ProteinID:
QFY59859
UniProt:
A0A5Q0C888
LinkDB
All DBs
Position
complement(1008536..1010908)
Genome browser
AA seq
790 aa
AA seq
DB search
MSKIPRERTKGMGKRPGKIGRASLQPAAEPLNIAHGALPSREVILRFIADHPQKASKREL
AKAFGLKGDSRVELKHLLRELEQEGMLQKTRKSLIRPGALPPVTVLDITTRDKDGELIGR
PAEWPEEMGVAPAVAIRQSTSAAGRNGKGKAPVAGIGDRILAKIFPASDRGGPAYTARII
KILDKRRGALLGVFKDAPGGAGRLLPIERRGEEMVIDPEYKGEAKDGDLVEVEVARLGRF
GLPRAKVLSIVGSVASEKAISMIAIHAHGIPYTFPPAVVAEADDAKPATMSHREDWRDVP
LITIDPADAKDHDDAVYAEADPSPDNPDGVIVTVAIADVSYYVRPNSPLDREALKRGNSV
YFPDRVVPMLPERISNDLCSLREGQDRPALAVRMMFSKEGRKIGHTFHRVMMKSAAKLSY
QQAQAAIDGKPDDKTGPLLEPILKPLWNAYRIMTLGRGRRQPLELDMPERKIQLKPDGTV
DRVVVPPRLDAHKLIEEMMIQANVSAAETLEKKRQVLIYRIHDGPTLAKQEVLREFLATL
GISLPKGGNMRANNFNMILAKADDTPHQTMVNEMVLRSQSQAIYSPENIGHFGLNLMKYA
HFTSPIRRYADLIVHRALVGSLGFGEGGITPDEEAALDDIAAEISTFERRAMAAERETVD
RLIAHHLAGRVGEEFEGRIGGVTKSGLFVALPDYGADGFIPISTLGTDYFIYDEAHQALS
GEKTGLGYRLGDSVTVKLAEAIPLAGALRFEMISEGRKMPTAVRSFHKAGRRDASRARKQ
AGTRPPRGRR
NT seq
2373 nt
NT seq
+upstream
nt +downstream
nt
gtgagcaaaatcccgcgggaaagaacgaagggcatgggcaagcgtcccggcaagatcgga
cgcgccagcctgcaacccgccgccgaaccgctgaacatcgcccacggggccctgccctcc
cgcgaagtgattctgcgctttatcgccgaccatccgcagaaggcgtcgaagcgcgagctt
gcgaaggccttcggactgaaaggcgacagccgcgtcgagctgaagcacctcctgcgcgaa
ctggagcaggaaggtatgctccaaaagacacgcaagtcgctgatccgacccggcgcactg
ccgccggttaccgtgctcgacatcacgacgcgcgacaaggacggcgaactgatcggacgc
ccggcggaatggccggaggagatgggggttgcgcccgccgtcgccatccgccagtcgaca
tcggcagcaggtcgcaacggcaagggcaaggctcctgtcgccggcataggcgaccgtatc
ctggcgaagatctttccggcctctgatcgcggcggcccggcctatacggcacgcatcatc
aagatcctggacaagcgccgcggcgcgttgctcggcgtcttcaaggatgcacctggtggt
gccggtcgtctgctgccgatcgagcggcgcggcgaggaaatggtgatcgaccccgagtac
aagggcgaggccaaggacggcgatcttgtcgaggtcgaagttgcccgtctcggtcgattc
ggcctgccgcgtgccaaggtgctctcgatcgtcggctccgtcgcatccgagaaggcgatc
tcgatgatcgctatccatgcgcatggcatcccttatacattcccgcctgccgtcgtcgcc
gaagccgacgatgccaagcccgcgacgatgtcgcatcgcgaggactggcgcgatgtgccg
ctgatcaccatcgatccggctgacgccaaggaccatgacgacgccgtctacgccgaggcg
gacccctcgcccgacaatccggatggtgtcatcgttactgtcgccatcgccgatgtctcc
tattacgttcgcccgaactctccgctcgatcgcgaagcgctgaagcgcggcaactcggtc
tatttccccgaccgggtggtgccgatgctgccggagcggatctcgaacgatctctgctcg
ttgagagaaggtcaggaccggccggcgcttgccgttcgcatgatgttttcgaaggaaggc
cgcaagatcggccataccttccatcgcgtgatgatgaagagcgcggcaaagctctcttac
cagcaggcgcaggcggcgatcgacggcaagcccgacgacaagacgggaccgcttctcgaa
ccgatcctgaagccgctctggaatgcctaccggatcatgacgctcggtcgtgggcgccgg
cagccactcgaactcgacatgccggagcgcaagatccagctgaaacccgacggcaccgtg
gatcgcgtcgtcgtgccgccgcgcctcgacgcgcacaagctgatcgaagaaatgatgatc
caggccaacgtttcggcagccgagacgctggagaagaagcggcaggtgctgatctaccgc
atccatgacggtccgacgctcgccaagcaggaagtgctgcgcgagttcctggcaacgctt
ggcatatcgcttcccaagggcggcaacatgcgcgccaacaatttcaacatgatcctcgcc
aaggcggatgacacgccgcaccagacgatggtcaacgagatggtgctgcgctcgcagagc
caggcgatctacagcccggagaatatcgggcacttcggcctgaacctaatgaagtatgcg
cacttcacctcgccgatccgccgctatgcggacctgatcgtgcatcgtgcgctggtcggc
tcgctcggcttcggtgagggcggaatcacgccagacgaagaagccgcacttgacgatatt
gccgccgagatctcgaccttcgagcgccgcgccatggccgccgagcgcgagacggtcgat
cgcctgattgcgcatcatcttgccggtcgtgtcggcgaggaattcgaagggcgcatagga
ggcgtgacgaaatcgggactatttgtcgccctgccggactatggagcggacggcttcatt
cctatatctacgctcggaacggactacttcatctatgatgaggcgcatcaggcgctgtct
ggcgagaaaaccggcctcggatatcgcctgggggacagcgttacggtgaaacttgcggaa
gccattccgctcgccggtgcgcttcgtttcgagatgatcagcgaagggcgaaagatgccc
actgctgtacgttcgttccataaggctggccggcgcgacgcaagccgcgcgcgcaaacag
gccggaacaaggccgccaagagggcggcgatag
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