Rhizobium grahamii: FZ934_06570
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Entry
FZ934_06570 CDS
T06285
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
rgr
Rhizobium grahamii
Pathway
rgr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rgr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FZ934_06570
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rgr03019
]
FZ934_06570
03009 Ribosome biogenesis [BR:
rgr03009
]
FZ934_06570
Enzymes [BR:
rgr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
FZ934_06570
Messenger RNA biogenesis [BR:
rgr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
FZ934_06570
Ribosome biogenesis [BR:
rgr03009
]
Prokaryotic type
rRNA helicases
FZ934_06570
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
QFY60124
UniProt:
A0A5Q0C734
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All DBs
Position
1306359..1308260
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AA seq
633 aa
AA seq
DB search
MTDFNGVVPAIAKALAKRGYAELTPVQNAMLDPELAVADALVSAQTGSGKTVAFGLALAP
TLLGDSDRFPSAAAPLALVIAPTRELALQVKRELEWLYEMTGAVIVSCVGGMDIRNERRA
LERGAHIVVGTPGRLCDHIRRKALNMSALKAVVLDEADEMLDLGFREDLEFILEESPDDR
RTLMFSATVPAAIAKLAKSYQRNAVRITMAAEEKQHGDIEYRALVVAPSDRENAIINVLR
YYEATTAIVFCSTRAAVNHLTARFHNRNFNVVALSGELTQNERSHALQAMRDGRARVCIA
TDVAARGIDLPGLDLVIHADLPTNPETLLHRSGRTGRAGRKGVSALIVPLNARRKAERLL
DNAGLSAEWARPPSAEDVSERDEERLLANPVFQEPAREEEKGLIDRLLATHGAEKLASAF
VNLYRANQSAPEDLIEVNVQDNSRRPRANSDAPRERSEKTPRGEFGPSVWFSLSVGRKQN
AEPRWLIPMICRHGSLTKREIGAIKMQQDETFVEIAADNAEAFLHATGPNKTMEKGIRVA
RLNGVPDFSRPATPKPYEGKKSFDNRREFRDDRPRGDFKKGKPEGAAAERDTKPWSKKPG
KSKPEGAAKFQDKPKFDGKPPKGGKPKFAKKKG
NT seq
1902 nt
NT seq
+upstream
nt +downstream
nt
atgacagattttaacggcgtcgttccggcgatcgccaaggcgttggcgaaacgcggttac
gccgagctcacacccgttcagaatgccatgcttgaccccgagctggccgtcgccgacgcg
ctcgtttcggcccagacgggttcgggcaagacggttgcgttcggccttgcgctggcgccg
acactgcttggtgattccgatcgattcccctcggcagccgcgccacttgcgctggtaatc
gcgccgacgcgcgaactcgcgctccaggtcaagcgagagctggaatggctctacgagatg
acgggcgccgtgatcgtcagctgcgttggcggcatggacatccgcaacgagcgccgggcg
ctcgagcgtggagcccacatcgtcgtcggcaccccgggacgcctgtgcgaccatatccgt
cgcaaagccctgaacatgtccgccttgaaggccgtcgtgctcgatgaagccgacgagatg
ctcgatctcggtttccgcgaagatctcgaattcatcctggaagaatcaccggatgaccgg
cgcacgctgatgttctcggcgacggtgcctgcagcgatcgctaagcttgcaaaaagctac
cagcgcaatgcggttcgcatcaccatggctgcggaagaaaagcagcacggtgacatcgag
taccgggcgctcgtcgttgcgccgagtgaccgcgaaaatgcgatcatcaacgttctccga
tactacgaggcgacgacagccattgtcttctgctctacccgtgcagcggtcaatcatctg
acagcgcgcttccacaatcgcaatttcaatgtcgttgccctttcaggggagctaacacag
aacgagcgcagccatgcattgcaggcaatgcgcgacggccgggcgcgtgtctgcatcgcg
accgacgttgctgcacgcggtatcgacctgccgggcctggacctcgtcattcatgcagac
ctcccgaccaatcctgaaaccttgcttcatcgcagcggacgtaccggccgcgccgggcgc
aagggtgtcagcgcgctgatcgtgccgctcaacgctcgtcgcaaggccgagcgcttgctc
gacaatgccggccttagcgctgaatgggcacggccgccgtctgccgaggatgtctccgaa
cgtgacgaggagcgcctgcttgcgaacccggtgttccaggaacctgcgcgggaagaagag
aagggtcttatcgaccgcctgctggcgacgcacggtgccgaaaagctcgcaagcgctttc
gtcaatctctatcgcgcgaaccagtctgcgcccgaggatctgatcgaggtcaacgttcag
gacaacagtcgccgcccccgcgccaattccgatgctccgcgcgagcgtagcgagaagacc
ccgcgtggcgaattcggtccgagcgtctggttctcgctgtctgtcggccgcaagcagaat
gctgagccgcgctggctcatcccgatgatctgccggcatggtagtctcacaaagcgtgaa
atcggcgccatcaagatgcagcaggacgagacgttcgtggagatcgcggctgacaatgcc
gaggctttcctgcacgcaaccggtccgaacaagaccatggagaagggcatccgcgtcgca
cggctgaatggcgttccggatttcagccgcccggcaactccgaagccctacgagggcaag
aagagcttcgacaatcgccgcgaattccgcgacgatcgtccgcgcggcgacttcaagaag
ggcaagcccgagggtgctgccgcagaacgcgatacgaagccctggagcaagaagcccgga
aagtcgaagcctgaaggcgccgcgaagttccaggacaagccgaaattcgatggaaagccg
ccgaagggcggcaagccgaaattcgcaaagaaaaagggctga
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