Piscinibacter gummiphilus: A4W93_00385
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Entry
A4W93_00385 CDS
T04831
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
rgu
Piscinibacter gummiphilus
Brite
KEGG Orthology (KO) [BR:
rgu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
rgu03016
]
A4W93_00385
Enzymes [BR:
rgu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
A4W93_00385
Transfer RNA biogenesis [BR:
rgu03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
A4W93_00385
Prokaryotic type
tRNA splicing ligases
A4W93_00385
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
ARN18497
UniProt:
A0A1W6L2P8
LinkDB
All DBs
Position
98369..99601
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AA seq
410 aa
AA seq
DB search
MRTMEQNYKTETIEGGVPLKMWTRGVPVEPEAKQQLANTARLPIVFKHVAAMPDVHLGIG
ATVGSVVPTLKAIIPAAVGVDIGCGMMAAKTTLRAEDLPDNLGPLRSAIERAVPHGSSPK
RSGRDRGSWENPPERVDAVWAQLADEFDVLCELHPRLRNTNNRKHLGTLGTGNHFIEVCL
DEEGAVWFMLHSGSRGVGNAIGTHFIELAKKDAEQHQRNLPDQDLAYFEEGARYFGDYVR
AVSWAQTFAQRNREVMMANLIATVRTVITKPFESHVEAVNCHHNYVQKEHHFGEDVFVTR
KGAVSAKRGEMGIIPGSMGARSYIVRGLGNPESFESCSHGAGRVMSRTKAKKLFTVEDHV
KATEGVECRKDADVVDEIPMAYKDIDAVMAAQQDLVEVVHTLKQVVCVKG
NT seq
1233 nt
NT seq
+upstream
nt +downstream
nt
atgagaaccatggaacagaactacaagaccgagaccatcgaaggcggcgtgccgctgaag
atgtggacccgcggcgtgcccgtggaacccgaggcgaagcagcagctcgcgaacaccgcg
cgcctgcccatcgtgttcaagcacgtggcggccatgccggacgtgcacctcggcatcggc
gccacggtggggtcggtcgtgcccacgctgaaggcgatcatcccggccgccgtcggcgtg
gacatcggctgcggcatgatggccgcgaagaccacgctgcgcgcggaagacctgcccgac
aacctcggcccgctgcgttcggccatcgaacgcgcggtgccgcacggcagctcgccgaag
cgttcggggcgcgaccgcggaagctgggagaacccgcccgagcgcgtggacgcggtgtgg
gcccagctcgccgacgagttcgacgtgctgtgcgagctgcacccgcgcctgcgcaacacg
aacaaccgaaagcacctgggaacgctcggcaccggcaaccacttcatcgaggtgtgcctc
gacgaggaaggcgccgtgtggttcatgctgcactcgggttcgcgtggcgtgggcaacgcg
atcggcacccacttcatcgaactcgccaagaaggacgcggagcaacaccagcgcaacctg
cccgaccaggacctggcgtacttcgaggaaggcgcccgctacttcggcgactacgtgcgc
gcggtgagctgggcgcagaccttcgcgcagcgcaaccgcgaggtgatgatggccaacctg
atcgccaccgtgcgcacggtgatcaccaagccgttcgagtcgcacgtcgaggcggtgaac
tgccaccacaactacgtgcagaaggagcatcacttcggcgaggacgtgttcgtgacccgc
aagggtgcggtgagcgccaagcgcggcgagatgggcatcatcccgggcagcatgggtgcg
cgcagctacatcgtgcgcggcctcggcaacccggagagcttcgagagctgcagccacggc
gccggccgcgtgatgagccgcacgaaggcgaagaagctcttcacggtcgaggaccatgtg
aaggcgaccgaaggcgtggaatgccgcaaggacgccgacgtggtcgacgagatcccgatg
gcctacaaggacatcgacgccgtgatggccgcgcagcaggacctggtggaagtggtccac
acgctcaagcaggtggtgtgcgtgaaggggtga
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