Piscinibacter gummiphilus: A4W93_01410
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Entry
A4W93_01410 CDS
T04831
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
rgu
Piscinibacter gummiphilus
Pathway
rgu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rgu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
A4W93_01410
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rgu03019
]
A4W93_01410
03400 DNA repair and recombination proteins [BR:
rgu03400
]
A4W93_01410
Enzymes [BR:
rgu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
A4W93_01410
Messenger RNA biogenesis [BR:
rgu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
A4W93_01410
DNA repair and recombination proteins [BR:
rgu03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
A4W93_01410
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
HRDC
RecQ_Zn_bind
Helicase_C
ResIII
HHH
Motif
Other DBs
NCBI-ProteinID:
ARN18682
UniProt:
A0A1W6L336
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All DBs
Position
complement(330243..332129)
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AA seq
628 aa
AA seq
DB search
MSAEPVLASASPSSAVPSHILHEVFGYAAFRGQQADIVDHVTAGGDALVLMPTGGGKSLC
YQVPAIARHRAGQGVALVVSPLIALMHDQVGALEEAGVHASFLNSSLTGEDAMRIEREMM
SGRLVMLYAAPERIATPRFLAQLDSLYERGLLSLFAIDEAHCVSQWGHDFREDYLSLDVL
HERYPNVPRIALTATADELTRADMIERLQLQDARVFISSFDRPNIRYAIVEKDNARTQLL
RFIGDEHEGDAGIVYCQSRKKVDETADWLVSEGLNALPYHAGLDASVRKRNQDRFLREDG
IVMVATVAFGMGIDKPDVRFVAHLDLPKNIEGYYQETGRGGRDGAPADAWMTYGLADVVN
QRRMIDESPAGEEFKRGQRAKLDALLALAEAHDCRRVRLLDYFGEASSPCGNCDNCLSPP
ATWDATEASRKALSCIYRFHQNNGQRFGAGHLIDVLRGKVTDKVTQYRHEGLSTFGIGAD
LSETQWRAVLRQLIALGHVRTEGEWNTLELTASARDVLRGEVQLLLRVPSETKGRSKGSR
GATGRGKERPPPIPMDADGTARFNALKAWRGAVAKEHNLPAYIVFNDATLAEMARVAPSS
LDELAEISGVGVKKLEAYGSEILRVLGG
NT seq
1887 nt
NT seq
+upstream
nt +downstream
nt
atgtccgctgaacccgtcctcgcctccgcttccccctcgtccgccgtgccgtcccacatc
ctccacgaggtgttcggctacgcggcgttccgcggccagcaggcggacatcgtcgaccac
gtcaccgccggcggcgatgccctggtgctgatgcccactggcggcggcaagagcctctgc
taccaggtgcccgccatcgcgcggcaccgcgcgggccagggcgtggcgctggtggtgagc
ccgctgatcgccctgatgcacgaccaggtgggcgcgctcgaggaagccggcgtgcacgcg
tcgttcctcaactcgtcgctcaccggcgaggacgccatgcgcatcgagcgcgagatgatg
agcggccgcctcgtgatgctgtacgccgcgccggagcgcatcgccacgccgcggttcctc
gcccagctcgactcgctgtatgaacgcggcctgctgagcctgttcgccatcgacgaagcc
cactgcgtgagccagtggggccacgacttccgcgaagactacctctcgctggacgtgctg
cacgagcgctacccgaacgtgccgcgcatcgcgctcaccgccacggccgacgaactcacg
cgtgccgacatgatcgagcgcctgcagctgcaggacgcccgcgtcttcatcagcagcttc
gaccgcccgaacatccgctacgccatcgtcgagaaggacaacgcgcgcacccagctgctg
cgcttcatcggcgacgaacacgagggcgacgccggcatcgtctattgccagtcgcgcaag
aaggtcgacgaaaccgccgactggctggtgagcgagggcctcaacgcgctgccgtaccac
gccggcctcgacgcctcggtgcgcaagcgcaaccaggaccgcttcctccgcgaggacggc
atcgtgatggtggccaccgtggccttcggcatgggcatcgacaagcccgacgtgcgcttc
gtcgcccacctcgacctgccgaagaacatcgagggctactaccaggagacaggccggggt
ggccgcgacggggcaccggccgacgcgtggatgacctacggcctggccgacgtcgtcaac
cagcgccgcatgatcgatgaaagcccggccggcgaagagttcaagcgcggccagcgggcc
aaactcgacgcgctgctggccctggccgaagcccacgactgccgccgcgtgcgcctgctc
gactacttcggcgaagcgagcagcccgtgcggcaactgcgacaactgcctgagcccgccc
gccacgtgggacgccaccgaggcctcgcgcaaggcgctcagctgcatctaccgcttccac
cagaacaacggccagcgtttcggcgcgggccacctgatcgacgtgctgcgtggcaaggtc
accgacaaagtcacgcagtaccgccacgagggcctctccacgttcggcatcggcgccgac
ctgtccgagacgcaatggcgcgccgtgctgcgccagctgatcgcgctgggccacgtgcgc
accgagggcgagtggaacacgctcgaactcaccgcgagcgcccgcgacgtgctgcgcggc
gaggtgcagctgctgctgcgcgtgcccagcgagacgaaggggcgctcgaagggctcgcgg
ggcgccaccggccgcggcaaggaacgcccgccgccgatccccatggacgccgacggcacc
gcacgtttcaatgccctcaaggcgtggcgcggggccgtggcgaaggagcacaacctgccg
gcgtacatcgtcttcaacgacgccacgctggccgagatggcgcgggtcgcgccgtcgtcg
ctcgacgagctggccgagatcagcggcgtgggcgtcaagaagctcgaggcctacggcagc
gagatcctccgcgtcctcggcggctga
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