Piscinibacter gummiphilus: A4W93_02560
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Entry
A4W93_02560 CDS
T04831
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
rgu
Piscinibacter gummiphilus
Pathway
rgu03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
rgu00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
A4W93_02560
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rgu03021
]
A4W93_02560
03400 DNA repair and recombination proteins [BR:
rgu03400
]
A4W93_02560
Enzymes [BR:
rgu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
A4W93_02560
Transcription machinery [BR:
rgu03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
A4W93_02560
DNA repair and recombination proteins [BR:
rgu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
A4W93_02560
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
ARN18885
UniProt:
A0A1W6L3N9
LinkDB
All DBs
Position
596595..600818
Genome browser
AA seq
1407 aa
AA seq
DB search
MKGLLDLFRQFTPDEHFDAIKIGLASPEKIRSWSFGEVKKPETINYRTFKPERDGLFCAK
IFGPIKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIDLAAPCAHIWFLKSL
PSRLGLVLDMTLRDIERVLYFEAYVVVDPGMTPLKKFSIMSEDDYDQKRTEFGDEFIALM
GAEGVQKLLAEIDLDVEIERLRGDMTGSELKVKKNSKRLKVMEAFKKSGIKPNWMVMNVL
PVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLARLLELKAPEIIVRNEKRMLQEA
VDSLLDNGRRGKAMTGANKRALKSLADMIKGKSGRFRQNLLGKRVDYSGRSVIVVGPTLK
LHQCGLPKLMALELFKPFIFSRLEAMGIATTIKAAKKEVESGTPVVWDILEEVIKEHPVM
LNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSIEAQMEART
LMLASNNVLFPANGEPSIVPSQDVVLGLYYATRERINGRGEGIIFSDVIEVQRALDNAQV
EITAKISVRLTEWTKNRETGEFTPETKLVDTTVGRALLSEILPKGLPFSNINKALKKKEI
SRLINTSFRKCGLKETVIFADKLLQSGFRLATRAGISIAIDDMLVPKEKHTLIERAEKEV
KEIEQQYVSGLVTAGERYNKVVDIWGKTGDEVGKVMMSQLSKQKTTDRHGKQVDQESFNS
IYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGARK
GLADTALKTANSGYLTRRLVDVTQDLVVTEDDCGTQNGMNMRALVEGGEVIESLRDRILG
RVTAIEVQHPETGEVLIPAGKLLDEDSLDDLEAAGVDEVKVRTALTCDTRFGLCGKCYGR
DLGRGGLVNRGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRAAVASSVDAKSDGIIGFN
PTMRYVTNGKGELVVISRSGEIVVSDPHGRERERHKVPYGAVLNIKADQSIKAGLVLATW
DPLTRPIITEFAGRAVFENVEEGLTVAKQLDEVTGLSTLVVIDAKRRGALKVVRPQVKLL
DPQGNEVKIPGTDHSVTIGFQVGSLIQIRDGQDLAPGEVLARIPVEGQKTRDITGGLPRV
AELFEARTPKDKGTLAEMTGTVSFGKETKGKVRLQITDPEGKVYEELVAKEKNILVHEGQ
VVNKGESIVDGPADPQDILRLLGIEELARYIVDEVQDVYRLQGVKINDKHIEVIVRQMLR
RVQIVDPGDSTYIANEQVERSELLDTNDKLRSEGKLIATHSDVLLGITKASLSTDSFISA
ASFQETTRVLTEAAIMGKRDELRGLKENVIVGRLIPAGTGMAFHDARKVKEELDDAERRA
ISAAEAEVFVSADAIDSTADAAGDSTE
NT seq
4224 nt
NT seq
+upstream
nt +downstream
nt
atgaagggtttgcttgatctcttccgccagttcacccctgatgagcatttcgatgccatc
aagatcggactggcttcccccgagaaaattcggtcgtggtccttcggcgaagtcaagaag
ccggagaccatcaactaccgcacgttcaagcctgagcgtgacggcctgttctgcgccaag
atcttcggcccgatcaaggactacgagtgcctgtgcggcaagtacaagcgcctgaagcac
cgtggcgtgatctgcgagaagtgcggcgtcgaagtcacgcagaccaaggtgcgccgcgag
cgcatgggtcacatcgacctcgccgcgccctgcgcgcacatctggttcctgaagtcgctg
ccgtcgcgtctgggcctcgtgctcgacatgacgctgcgcgacatcgagcgcgtgctgtac
ttcgaagcgtacgtggtggtggacccgggcatgaccccgctgaagaagttcagcatcatg
tccgaggacgactacgaccagaagcgcacggaattcggtgacgagttcatcgcgctgatg
ggcgccgagggcgttcagaagctgctggccgagatcgacctcgacgtcgagatcgaacgc
ctgcgcggcgacatgaccggctccgagctcaaggtcaagaagaactccaagcgcctgaag
gtcatggaggccttcaagaagtccggcatcaagccgaactggatggtgatgaacgtgctg
cccgtgctgccgccggacctgcgtccgctggtgccgctggacggtggccgtttcgccacg
tcggacctgaacgacctctaccgtcgcgtcatcaaccgcaacaaccgcctggcccgcctg
ctcgaactgaaggcgccggagatcatcgtgcgcaacgaaaagcgcatgctgcaggaagcg
gtggactcgctgctcgacaacggccgtcgcggcaaggcgatgaccggtgcgaacaagcgc
gcgctgaagtcgctcgccgacatgatcaagggcaagagcggccggttccgtcagaacctg
ctgggcaagcgcgtcgactactcgggccgttcggtcatcgtggtgggcccgacgctcaag
ctgcaccagtgcggcctgccgaagctgatggcgctcgaactgttcaagccgttcatcttc
tcgcgcctggaagccatgggcatcgccaccaccatcaaggcggcgaagaaggaagtggaa
tcgggcacgccggtcgtgtgggacatccttgaggaagtcatcaaggaacacccggtcatg
ctgaaccgcgcgccgacgctgcaccgcctgggcatccaggcgttcgagccggtgctgatc
gaaggcaaggccatccagctgcacccgctggtctgcgccgcgttcaacgccgacttcgac
ggtgaccagatggccgtccacgtgccgctgtcgatcgaagcgcagatggaagcccgcacg
ctgatgctggcctccaacaacgtgctgttcccggccaacggcgaaccgtcgatcgtgccg
tcgcaggacgtggtgctgggtctgtactacgcgacccgcgagcgcatcaacggccgcggc
gaaggcatcatcttctccgacgtgatcgaagtgcagcgcgcgctcgacaacgcccaggtc
gagatcaccgccaagatcagcgtgcgcctgaccgagtggaccaagaaccgcgaaaccggt
gagttcacgcccgagaccaagctcgtcgacaccaccgtcggccgtgccctgctgtccgag
atcctgccgaagggcctgccgttctcgaacatcaacaaggcgctgaagaagaaggaaatc
tcgcgcctgatcaacacttcgttccgcaagtgcggtctgaaggaaacggtgatcttcgcc
gacaagctgctgcagtcgggcttccgcctggccacgcgcgccggcatctcgatcgcgatc
gacgacatgctcgtgccgaaggaaaagcacacgctgatcgaacgcgccgagaaggaagtc
aaggagatcgagcagcagtacgtctccggtctcgtgaccgctggcgagcgctacaacaag
gtcgtggacatctggggcaagaccggcgacgaagtcggcaaggtcatgatgagccagctg
tccaagcagaagaccacggaccgccatggcaagcaggtggaccaggagtcgttcaactcc
atctacatgatggccgactccggtgcgcgcggttccgccgcgcagatccgccagctggcc
ggcatgcgcggcctgatggccaagccggacggctcgatcatcgagacgcccatcacggcg
aacttccgcgaaggcctgaacgtcctgcagtacttcatctccacccacggcgcccggaag
ggtctcgcggacacggcgctgaagaccgcgaactccggctacctgacccgccgtctcgtc
gacgtgacccaggacctggtggtcacggaagacgattgcggcacccagaacggcatgaac
atgcgcgcgctggtcgagggtggtgaagtcatcgaaagcctgcgcgaccgcatcctcggc
cgcgtgacggccatcgaggtgcagcatccggaaacgggtgaggtgctgatccccgcgggc
aagctgctcgacgaggactcgctggacgacctcgaagccgccggcgtcgacgaagtcaag
gtccgtaccgcactcacctgcgacacgcgcttcggcctgtgcggcaagtgctacggccgc
gacctgggccgtggcggcctcgtgaaccgcggcgaagccgtgggcgtgatcgctgcgcag
tcgatcggcgaaccgggcacgcagctgacgatgcgcacgttccacatcggtggcgctgcg
tcgcgtgcagcggtggcctcgagcgtcgatgcgaagtcggacggcatcatcgggttcaac
ccgacgatgcgctacgtgaccaacggcaagggcgagctcgtcgtgatctcgcgctccggc
gagatcgtggtgtcggacccgcacggccgcgagcgcgagcgccacaaggtgccgtacggc
gccgtgctgaacatcaaggccgaccagtccatcaaggccggcctggtgctcgccacgtgg
gacccgctgacccgcccgatcatcaccgagttcgccggccgtgccgtcttcgagaacgtc
gaagaaggcctgaccgtggcgaagcagctggacgaagtgaccggcctgtcgaccctcgtc
gtgatcgacgcgaagcgccgcggtgccctgaaggtggtgcgtccgcaggtcaagctgctc
gacccgcaaggcaacgaagtgaagatccctggcaccgaccactcggtgaccatcggcttc
caggtgggctcgctgatccagatccgcgacggccaggacctcgccccgggtgaagtgctc
gcacgcatcccggtggaaggccagaagacccgtgacatcaccggcggtctgccgcgcgtg
gccgaactgttcgaggcgcgcacgccgaaggacaagggcacgctggccgagatgaccggc
acggtgtcgttcggcaaggagacgaagggcaaggttcgcctgcagatcaccgatccggaa
ggcaaggtctacgaggaactcgtcgccaaggaaaagaacatcctggtgcacgaaggccag
gtggtgaacaagggcgagtccatcgtcgacggtccggcggacccgcaggacatcctgcgc
ctgttgggcatcgaggaactggcgcgctacatcgtcgacgaagtgcaggacgtctaccgc
ctgcagggcgtgaagatcaacgacaagcacatcgaggtgatcgttcgccagatgctccgt
cgtgtgcagatcgtcgatccgggcgacagcacctacatcgccaacgaacaggtggagcgt
tcggagctgcttgacacgaacgacaagctgcgttcggaaggcaagctgatcgccacccac
agcgacgtgctcctgggcatcacgaaggcgtcgctgtcgaccgacagcttcatctccgcg
gcgtccttccaggaaaccacgcgcgtgctcaccgaggctgccatcatgggcaagcgcgac
gagctgcgtggcctgaaggaaaacgtcatcgtgggtcgcctgatccccgccggcaccggc
atggccttccacgacgcccgcaaggtcaaggaagagctggacgacgccgagcgccgtgcg
atctccgcggcggaagccgaggtgttcgtgtcggccgacgcgatcgactcgacggcggac
gccgccggcgattcgacggagtaa
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