Piscinibacter gummiphilus: A4W93_16195
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Entry
A4W93_16195 CDS
T04831
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
rgu
Piscinibacter gummiphilus
Pathway
rgu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rgu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
A4W93_16195 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rgu03021
]
A4W93_16195 (rho)
03019 Messenger RNA biogenesis [BR:
rgu03019
]
A4W93_16195 (rho)
Transcription machinery [BR:
rgu03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
A4W93_16195 (rho)
Messenger RNA biogenesis [BR:
rgu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
A4W93_16195 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
AAA_25
NACHT
OB_RNB
AAA_22
AAA
S1CSD-TOTE-2
Motif
Other DBs
NCBI-ProteinID:
ARN21315
UniProt:
A0A1W6LAJ1
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All DBs
Position
3618142..3619404
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AA seq
420 aa
AA seq
DB search
MHLSELKALHVSALIKMGEELEIDAVTRMRKQELMFAIMKKRAKGGEQVFGDGVLEVLPD
GFGFLRAPDASYMASTDDIYLSPSQIRRFNLHTGDAIEGEVRVPKDGERYFALVKVDRVN
GLTPEESKHKIMFENLTPLFPKEQFRLERDIKAEENITGRIVDLIAPLGKGQRALLVAPP
KSGKTVMMQNLAHAITANYPDVYLIVLLVDERPEEVTEMQRTVRGEVISSTFDEPAARHV
QVAEMVIERAKRLVEMKKDVVILLDSITRLARAYNNVLPSSGKVLTGGVDSNALQRPKRF
FGAARNIEEGGSLTIIGTALVDTGSRMDEVIYEEFKGTGNCEIHLDRRMAEKRVYPSILL
NKSGTRREELLLKPEILQKTWILRKLLYSMDEIEAMEFILDKMKSTKTNLDFFDMMRRGG
NT seq
1263 nt
NT seq
+upstream
nt +downstream
nt
atgcacctgtcagaactgaaagccctccacgtttccgcgctcatcaagatgggcgaggaa
ctggaaatcgacgccgtcacgcgcatgcgcaagcaggagctgatgttcgcgatcatgaaa
aagcgcgccaaggggggcgagcaggtcttcggcgacggtgtgctcgaagtgctgcccgac
ggcttcggcttcctgcgcgcgccggacgcgagctacatggcgtccaccgacgacatctac
ctgtcgcccagccagatccgccgcttcaacctccacaccggcgatgccatcgaaggtgaa
gtgcgggtaccgaaggacggcgagcgctacttcgccctcgtgaaggtcgaccgtgtcaac
ggcctgaccccggaggaaagcaagcacaagatcatgttcgagaacctgacgccgctgttc
ccgaaggaacagttccgtctcgagcgtgacatcaaggccgaggaaaacatcaccggccgc
atcgtcgacctcatcgccccgctgggcaagggccagcgcgcgctgctcgtcgccccgccc
aagagcggcaagacggtgatgatgcagaacctggcccatgccatcacggccaactacccc
gacgtctacctgatcgtgctgctcgtcgacgagcgcccggaagaagtcacggaaatgcag
cgcaccgtgcgcggcgaggtcatcagctccaccttcgacgaacccgcggcccgccacgtg
caggtggccgagatggtgatcgagcgcgccaagcgcctggtcgagatgaagaaggacgtg
gtcatcctcctcgactccatcacccgcctcgcccgcgcgtacaacaacgtgctgccgtct
tcgggcaaggtgctcaccggcggtgtcgactccaacgcgctgcagcgccccaagcgcttc
ttcggcgcggcgcgcaacatcgaggaaggcggctcgctcaccatcatcggcaccgcgctg
gtcgacaccggcagccggatggacgaagtcatctacgaagagttcaagggcaccggcaac
tgcgaaatccacctggatcgccgcatggccgagaagcgggtctacccgtcgatccttctg
aacaagtcgggcacgcgccgcgaggaactgctgctgaagccggaaatcctccagaagacc
tggatcctgcgcaagctgctgtactcgatggacgagatcgaggcgatggagttcatcctc
gacaagatgaagtcgacgaagaccaacctggacttcttcgacatgatgcgccgcggcggc
tga
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