Piscinibacter gummiphilus: A4W93_24025
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Entry
A4W93_24025 CDS
T04831
Name
(GenBank) ribonuclease II
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
rgu
Piscinibacter gummiphilus
Brite
KEGG Orthology (KO) [BR:
rgu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
rgu03016
]
A4W93_24025
Enzymes [BR:
rgu01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
A4W93_24025
Transfer RNA biogenesis [BR:
rgu03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
A4W93_24025
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
Myosin_N
WHD_RNase_II
KOW5_SPT5
RNase_II_C_S1
Motif
Other DBs
NCBI-ProteinID:
ARN22730
UniProt:
A0A1W6LER8
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All DBs
Position
5282182..5284230
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AA seq
682 aa
AA seq
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MYALFDDAGKFLAGRVMSETDTSAQVELDSGKRVKVKAANVLLKFEKPAPAELLAEGQRL
AADIDLDLAWEFAPDEEFGFADLARDYFDAGAGPTQQAAALFRLFEAPHYFRRAGKGLFK
KAPEEIVKAALLGIERKKQQAAQIEAWADELIAGQCPAPVREQLYKILFKPDKNASEYKA
VVEASRRAHRAPLDLLTAAGAIDSPYQFHWRRFLFENFPKGTGFPALQAPAIKDTLPLAP
VQAFSIDDSQTTEIDDALSVQGLGSGTVVFGVHIAAPGLAFGPETPLDKVARDRLSTVYM
PGYKLTMLPDEVVQAYTLQEGRDCPAVSLYVTFDEATLAVQGFETKLEQVPIAANLRHDQ
LDTVITEATLTGAAPAGYGFAPELAFAYRLAQHLKAGREVARGKPENFNRPDYNFRLDGN
AGAEPKGDETVAISTRTRGSPLDLIVAEAMILANSTWGGWLNELGVPGIYRSQASMAPGV
KVRMSTKAAPHAGMGVAQYTWATSPLRRYVDLVNQWQIIACARHGRTALLAAAFKPKDAA
LFSIISGFDEAYTAYNGFQNGIERYWTLRYLAQNGLDELDAAVMKDGLVRADTLPLVFKA
IGAERLPRGARVRVKVNGTDLLTLDVQASVLARIDDPSTTDDDAAVEDSELEDVSAGPLT
LAIDVQGDNGAEDSPAPAAPTP
NT seq
2049 nt
NT seq
+upstream
nt +downstream
nt
atgtatgcactgttcgatgacgccgggaagttcctcgccggccgcgtgatgtcggagacg
gacacgtccgcccaggtggaactcgactccggcaaacgcgtgaaggtgaaggcagccaac
gtgctgctcaagttcgagaaacccgccccggccgagctgctcgccgaagggcagcgcctg
gccgcggacatcgatctcgacctggcctgggaattcgcccccgacgaggaattcggcttc
gccgacctcgcccgcgactacttcgacgccggcgccggccccacgcagcaggccgccgcc
ctgttccgcctgttcgaggcaccgcactacttccggcgtgccggcaagggcctcttcaag
aaggctccggaagagatcgtcaaggccgcgctgctgggcatcgagcgcaagaagcagcag
gccgcccagatcgaggcgtgggccgacgagctgatcgccggccagtgccccgcgcccgtg
cgcgagcagctctacaagatcctgttcaagcccgacaagaacgcgtccgagtacaaggcc
gtggtcgaagcctcgcgccgcgcccaccgcgcgccgctcgacctcctgaccgccgccggg
gccatcgactcgccgtaccagttccactggcgccgcttcctgttcgagaacttcccgaag
ggcaccggcttcccggcgctgcaggccccggccatcaaggacacactgccgctcgcgccc
gtccaggcgttctcgatcgacgactcgcagaccaccgagatcgacgacgcgctctccgtg
cagggcctcggctccggcaccgtcgtgttcggcgtgcacatcgccgcgccgggcctggcc
ttcgggcccgagaccccgctcgacaaggtcgcccgcgaccgcctgtccaccgtctacatg
cccggctacaagctgaccatgctgccggacgaggtggtgcaggcctacacgctgcaggaa
ggccgcgactgcccggccgtctcgctgtacgtgaccttcgacgaggccacgctcgccgtc
cagggcttcgagacgaagctcgagcaggtgcccatcgcggcgaacctgcgccacgaccag
ctcgacaccgtgatcaccgaggccacgctgaccggcgccgcgccggccggctacggcttc
gcgcccgagctggccttcgcctaccgcctcgcccagcacctgaaggccggccgtgaagtc
gcccgcggcaagcccgagaacttcaaccgccccgactacaacttccgcctcgacggcaac
gccggcgccgaaccgaagggcgacgagacggtggccatcagcacccgcacgcgcggctcg
ccgctcgacctgatcgtggccgaggccatgatcctcgcgaacagcacgtggggcggctgg
ctcaacgagctgggcgtgccgggcatctaccgcagccaggccagcatggccccgggcgtg
aaggtgcgcatgagcacgaaagccgcaccgcacgccggcatgggcgtggcgcagtacacc
tgggccacgtcgccgctgcgccgctacgtcgacctcgtgaaccagtggcagatcatcgcg
tgcgcccgccacggccgcaccgcgctgctggccgcggcgttcaagccgaaggacgcggcg
ctgttctccatcatctccggcttcgacgaggcctacaccgcgtacaacggcttccagaac
ggcatcgaacgctactggacgctgcgctacctcgcccagaacggcctcgacgaactcgac
gcggcggtcatgaaggacggcctcgtgcgcgccgacacgctgccgctcgtgttcaaggcc
atcggtgccgaacgcctgccccgcggcgcccgcgttcgcgtgaaggtcaacggcaccgac
ctgctgaccctcgacgtgcaggcgagcgtgctcgcccgcatcgacgacccgtccacgacc
gacgacgacgcggcggtggaggacagcgaactggaagacgtgtccgccggcccgctgacg
ctggccatcgacgtccaaggcgacaatggcgccgaggactccccggcgcccgccgccccc
actccctga
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