Ruminococcus gauvreauii: NQ502_16240
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Entry
NQ502_16240 CDS
T08490
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
rgv
Ruminococcus gauvreauii
Pathway
rgv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rgv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NQ502_16240
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rgv03019
]
NQ502_16240
Messenger RNA biogenesis [BR:
rgv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
NQ502_16240
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
RMMBL
Lactamase_B
Lactamase_B_2
Anti-Pycsar_Apyc1
SIS_2
Lactamase_B_6
FCSD-flav_bind
Motif
Other DBs
NCBI-ProteinID:
UWP58904
UniProt:
A0ABY5VE69
LinkDB
All DBs
Position
3446372..3448036
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AA seq
554 aa
AA seq
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MKKINNSKLKIIPLGGLEQIGMNITAFECEDSIVVVDCGLSFPEDDMLGIDLVIPDVTYL
KDNADKVKGFVITHGHEDHIGALPYVLKQLNAPIYATKLTQGLIENKLKEHNLLRTTKRK
TVKHGQSINLGCFRIEFIKTNHSIADASALAIYSPAGIVIHTGDFKVDYTPVFGDAIDLQ
RFAEIGKKGVLALMCDSTNAERPGFTMSERTVGKTFDNIFAEHKNTRIIIATFASNVDRV
QQIINSAYKYGRKVVVEGRSMVNVISTASELGYLNIPDKTLIDIDKMKNYPDEQMVLITT
GSQGESMAALSRMAADIHRKVTIKPNDTIIFSSNPIPGNEKAVSKVINELSAKGADVIFQ
DAHVSGHACQEEIKLIYSLVRPKYAIPVHGEYRHLKAHAQIARNIGLPKENVFIMRSGEV
MEMGQEQAQIVGKVHTGAILVDGLGVGDVGNIVLRDRQHLAEDGIIIVVLTLEKFSNQLL
AGPDIVSRGFVYVRESEDLMGEARVVVEDALDGCLAKQVSDWGKIKTVIKDGLSEFVWKR
TKRRPMILPIIMEA
NT seq
1665 nt
NT seq
+upstream
nt +downstream
nt
ttgaaaaaaattaataattcaaaattgaaaatcattccgctgggcggcctggagcagatt
ggaatgaatattactgcctttgagtgtgaagacagtattgttgtcgtggactgcgggctg
tcatttccggaagacgatatgctgggcattgacctggtgatcccggatgtgacttatctg
aaagacaacgcggacaaagtaaaaggctttgtcatcacacatggacatgaggaccatatc
ggtgcgcttccttatgtgctgaaacaattaaatgcaccgatctatgcgacgaaactgacg
cagggattaattgaaaataaactaaaggaacacaatcttcttcgaactaccaaaagaaaa
accgtaaaacatggccagtcaatcaaccttggctgcttccgtatcgaatttattaaaaca
aaccacagtattgcagacgcttctgccctggctatctattcaccggcaggaatcgttatt
catacaggagactttaaagtggattatacgcctgttttcggcgatgcaatcgatcttcag
cgctttgcggagattggaaaaaagggtgtgctggccctgatgtgcgacagtacgaacgcg
gaacgccccgggtttaccatgtcagaacgcaccgttggaaaaacatttgataatatattt
gccgaacacaaaaatacgcggattatcattgcaacatttgcttcaaatgttgaccgtgta
cagcagatcatcaactctgcatataaatacggacgcaaggttgttgtggaagggcggagc
atggtaaatgtcatctcgaccgcctcggaactgggatatctgaatatcccggataaaacc
ttaattgatattgacaagatgaagaactatccggatgaacagatggtgctcataacgacg
ggaagccagggtgagtccatggcggctctctccagaatggcggcggatattcacagaaaa
gttacaatcaaaccgaacgatacaattattttcagctccaacccgattccgggaaatgaa
aaagcggtgtcaaaggtgatcaatgagctttctgcgaaaggggctgacgttatattccag
gatgcgcacgtatccgggcatgcctgtcaggaggagattaaactgatctattccctcgta
aggcccaaatacgcgattccggtgcatggtgaatatcggcatctgaaggcacatgcacag
atagcccgtaacattggactgcccaaagaaaatgtatttattatgagatccggtgaagtc
atggagatgggtcaggagcaggcacagattgtgggaaaagtgcatacgggtgcaattctc
gtagacgggctcggtgtaggggacgtcgggaacatcgtgcttcgtgaccgccagcacctg
gcggaggacgggatcatcatcgtagtgcttacgctggagaaattcagcaaccagctgctg
gccggtccggacattgtatcacgcggatttgtatatgtacgggagtcggaagacctgatg
ggcgaagccagagttgtagtggaggacgcactggatggctgcctcgcgaaacaggtctct
gactggggaaaaataaaaactgtcattaaagacgggttgagtgaatttgtatggaagaga
acaaagagacgtccgatgattcttccgataataatggaggcgtaa
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