Rhodococcus jostii: RHA1_ro00015
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Entry
RHA1_ro00015 CDS
T00382
Name
(GenBank) possible DNA-ligase (ATP), C-terminal
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
rha
Rhodococcus jostii
Pathway
rha03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
rha00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
RHA1_ro00015
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rha03400
]
RHA1_ro00015
Enzymes [BR:
rha01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
RHA1_ro00015
DNA repair and recombination proteins [BR:
rha03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
RHA1_ro00015
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_C
Motif
Other DBs
NCBI-ProteinID:
ABG91851
LinkDB
All DBs
Position
25021..25911
Genome browser
AA seq
296 aa
AA seq
DB search
MKWDGQRAIATVDDGGSRLFSRNGNDITATFPELAGPVSDALGGREAILDGEIVALDASG
RPSFSRLQRRMHVLSPTTELRNEVPVTYYVFDVLSLDGKSTTGLPYLRRRAELADLALSG
PRLQVPPYWTDVDGEEMLDRARRHHLEGAVAKRVDSTYQPGRRSPAWIKQPLRANTEGII
VGWVDGTGAARDGIGSLLLAAYDDDHRLVYIGHVGTGFTTATRKSLREQLAALERPTTPL
SSPPPARDTKGAHWVEPQLVGDVEYREHISGRLRHPSWKGLREDKAPSEVDLPGRH
NT seq
891 nt
NT seq
+upstream
nt +downstream
nt
atgaagtgggatggtcaacgtgccatcgccaccgtcgacgatggtggatcccggctgttc
agccgcaacggaaatgacatcactgcgacctttccggagctggccgggccggtatccgac
gcgctgggcggacgtgaggcgatcctcgacggcgagatcgtcgcgctcgacgcgagcggc
cggccgtcgttcagccgcctccaacggcgcatgcacgtgctgtcccccaccacagaactc
cgcaacgaggtgcccgtcacgtattacgtgttcgacgtcctatccctcgatggcaagtcc
acgactgggcttccctatctgcggcggcgggccgaactcgccgaccttgcgctgtccggc
ccccgcctgcaggtgccgccgtactggaccgacgtcgacggcgaggagatgctcgatcgc
gcccgtaggcaccacctcgagggagcagtcgcaaaacgcgtcgactcgacgtatcaaccg
ggtcgccgctcccctgcctggatcaagcaaccgctacgcgccaataccgaagggatcatc
gtcggctgggtcgatggcaccggagccgcccgcgacggtatcggatcacttctcctcgcc
gcgtatgacgacgaccaccggctggtgtacatcggacatgtcggcaccggtttcaccacc
gcgacacggaagtcactacgagagcagctcgcggcgctggaacgacccacgactcctctg
tcctcgcccccacctgcgcgggacaccaagggcgcacactgggtcgagccgcagttggtc
ggcgacgtcgagtaccgcgagcacatcagtggcaggctgcgccatcccagctggaagggc
ctgcgcgaggacaaggcgccgagtgaagtcgacttgccgggtcggcactga
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