Rhodococcus jostii: RHA1_ro01069
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Entry
RHA1_ro01069 CDS
T00382
Symbol
dnaE1
Name
(GenBank) DNA-directed DNA polymerase III alpha subunit
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
rha
Rhodococcus jostii
Pathway
rha03030
DNA replication
rha03430
Mismatch repair
rha03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rha00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
RHA1_ro01069 (dnaE1)
03430 Mismatch repair
RHA1_ro01069 (dnaE1)
03440 Homologous recombination
RHA1_ro01069 (dnaE1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rha03032
]
RHA1_ro01069 (dnaE1)
03400 DNA repair and recombination proteins [BR:
rha03400
]
RHA1_ro01069 (dnaE1)
Enzymes [BR:
rha01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
RHA1_ro01069 (dnaE1)
DNA replication proteins [BR:
rha03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
RHA1_ro01069 (dnaE1)
DNA repair and recombination proteins [BR:
rha03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
RHA1_ro01069 (dnaE1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
Motif
Other DBs
NCBI-ProteinID:
ABG92896
UniProt:
Q0SHU0
LinkDB
All DBs
Position
complement(1134560..1138096)
Genome browser
AA seq
1178 aa
AA seq
DB search
MADSFVHLHNHTEYSMLDGAAKVGPLFEEAERLGMSAVGMTDHGNMYGASEFYNEAKKQG
IKPIIGIEAYIAPESRFNTKRVLWGDRSQKSDDVSGSGAYTHMTMVAENATGLRNLFKLS
SLASIEGQLGKWARMDEELIATHHEGIIATTGCPSGEIQTRLRLGHDREALEAAAKWQEI
WGKDNFFLELMDHGLSIERRVREGLLEISKKLEIPPLATNDCHYVTKEAAENHEALLCIQ
TGKTLSDPTRFKFDGDGYYLKPAAEMRALWDDQVPGACDNTLLIAERVQSYDDVWAHHDR
MPIFPVPEGETQGTWLRKEVMRGLDRRFPDGPPEEYLARADYEIGVILEMGFPAYFLVVG
DLINHAREVGIRVGPGRGSAAGSLVAYAMGITNIDPIPHGLLFERFLNPERVSMPDIDID
FDDRRRGEMVRYATDKWGSDRVAQVITFGTIKTKAAIKDSARVQFGQPGFAIADQITKAL
PPPIMAKDISVSGITDPNHERYKEAVEVRALIDSNPDVAKIYQTAKGLEGLIRNAGVHAC
AVIMSSEPLMDAIPVWKRAQDGAIITGWDYPSCEAIGLLKMDFLGLRNLTVIGDAIDNIK
ANRGIDLDLDTLALDDQATYELLSRGDTLGVFQLDGSAMRDLLRRMQPTGFEDIVAVLAL
YRPGPMGMNAHNDYADRKNGRQEVKPIHPELEEPLKEILADTYGLIVYQEQIMQIAQKVA
GYSLGQADILRRAMGKKKLSVLEEAYAGFREGMLANEFSEPAIKALWDTILPFAGYAFNK
SHAAGYGLVSFWTGYLKANYPAEYMAGLLTSVGDDKDKAAVYLADCRKMGITVLPPDVNE
SEVNFASVGEDIRFGMGAVRNVGANVVGSIIKARKEKSKFVDFSDYLNKIDAAACSKKVT
ESLIKAGGFDSLGHPRKGLMLVHADAIDAVMGTKKAEAIGQFDLFGGDDADESISSVFNV
KIPDEEWDSKHRLALEREMLGLYVSGHPLNGVEHVLSAQSDTAIPTILEGDIKDGTQVTV
GGILASVNRRINKNGLTWASAQLEDLTGGIEVLFFPQAYSVYGMDVTEDSVVLVKARVSI
RDDRISLIANDLAVPDLSAVGVAKPLAVSLPLRQCTKDKLGALRQVLTRHPGTSDVHVRL
IGGTEVTLWKVDDVLRVEPSSALMGDLKALLGPSCLSV
NT seq
3537 nt
NT seq
+upstream
nt +downstream
nt
gtggctgactcgttcgtacatctgcacaatcacaccgagtactcgatgctcgacggtgcg
gccaaggtcggccccctgttcgaagaggccgagcgactggggatgtcggcggtcggcatg
accgaccacggcaacatgtacggcgccagcgagttctacaacgaggccaagaagcagggc
atcaagccgatcatcggcatcgaggcgtacatcgcgcccgagtcccgcttcaacaccaag
cgcgtgttgtggggcgaccgcagccagaagtccgacgacgtctccggtagcggtgcgtac
acccacatgacgatggtcgcggagaacgcgaccggcctgcggaacctgttcaagctgtcc
tcgctcgcgtccatcgagggtcagctcggcaagtgggcacgaatggacgaagagctcatc
gccacccaccacgagggcatcatcgcgaccacgggctgcccgtccggtgagatccagacc
cggcttcggctcggccacgaccgcgaggcgctcgaggccgccgccaagtggcaggagatc
tggggcaaggacaacttcttcctcgagctgatggaccacggactgtcgatcgagcgacgg
gtgcgcgagggcctgctcgagatcagcaagaagctcgagattccgccgctcgccaccaac
gactgccactacgtcaccaaggaagccgcggagaaccacgaggccctcctctgcatccag
accggtaagacgctgtccgaccccacccggttcaagttcgacggcgacggctattacctg
aagccggccgcggagatgcgggcgctgtgggacgaccaggtgcccggagcgtgcgacaac
acactgctgatcgccgagcgggtccagtcgtacgacgacgtgtgggcgcaccacgaccgg
atgccgatcttcccggtccccgagggcgagacgcagggcacctggctgcgcaaggaggtc
atgcgcggactggaccgccggttccccgacggtccgcccgaggagtacctcgcccgcgcc
gactacgagatcggcgtcatcctcgaaatgggtttccccgcctacttcctcgtcgtcggc
gacctcatcaaccacgcccgggaggtcggcatccgcgtcggccccggccgaggctcggcg
gccggttcgctcgtcgcctacgcgatgggcatcaccaacatcgaccccatcccgcacggc
ctgctgttcgagcggttcctgaaccccgagcgcgtctcgatgcccgatatcgatatcgac
ttcgacgatcgccgtcgcggcgagatggtgcgctacgcgacggacaagtggggcagcgac
cgcgtcgcccaggtcatcacgttcggcaccatcaagacgaaggcggccatcaaggactcc
gcccgagtccagttcggtcagcccggtttcgcgatcgccgaccagatcacgaaggcgttg
ccgccgccgatcatggccaaggacatctcggtgtccggcatcaccgacccgaaccacgag
cgctacaaggaagcggtggaggttcgcgccctcatcgactccaacccggacgtcgcgaag
atctaccagacggccaagggactcgagggcctgatccgtaacgccggcgtccacgcctgc
gcggtgatcatgtcgtccgaaccgctgatggacgcgattcccgtgtggaagcgcgcccag
gacggcgccatcatcaccggctgggactacccgtcgtgcgaggccatcggcctgctgaag
atggacttcctcggactgcggaacctcaccgtcatcggtgacgccatcgacaacatcaag
gccaaccgggggatcgacctcgatctcgacaccctcgcgctcgacgatcaagccacgtac
gaactgctctcccgcggagacactctcggtgtgttccagctcgacggcagcgcgatgcgc
gacctgctgcgccgcatgcagcccaccggcttcgaggacatcgtcgcggtgctcgcgctg
taccggcccggtccgatgggcatgaacgcgcacaacgactacgccgaccgcaagaacggg
cggcaagaggtcaaacccatccacccggagctcgaggagcccctgaaagagatcctggcc
gacacgtacggcctgatcgtctaccaggagcagatcatgcagatcgctcagaaggtggcc
gggtactcgctcggacaggccgacattctccgccgagccatgggtaagaaaaagctctcg
gtgctggaggaggcgtacgccggtttccgtgagggcatgctcgccaacgaattctccgag
cccgccatcaaggcgctgtgggacaccatccttccgttcgccgggtacgcgttcaacaag
tcgcacgcggccgggtacggcctggtgtcgttctggaccgggtacctcaaggccaactat
ccggccgagtacatggccggtctgctcacctcggtcggtgacgacaaggacaaggccgcc
gtctacctggcggactgccgcaagatgggtatcaccgtgctgccgccggacgtcaacgaa
tcggaggtcaacttcgcctccgtcggtgaggacatccggttcggcatgggcgcggtccgc
aacgtcggtgccaacgtcgtgggctcgatcatcaaggcgcgcaaggagaagtccaagttc
gtcgacttctccgactacctcaacaagatcgacgccgccgcctgctccaagaaggtcacc
gagtcgctgatcaaggcaggcgggttcgactcgctgggtcatccgcgcaagggactcatg
ctcgtccacgccgacgccatcgacgcggtgatgggtaccaagaaggcggaggcgatcgga
cagttcgacctgttcggtggcgacgacgccgacgagtcgatctcctcggtgttcaacgtg
aagatcccggacgaggagtgggactcgaagcaccggttggcgctggaacgggaaatgctg
ggactgtacgtgtccgggcacccgctcaacggcgtcgaacacgtgctgtcggcgcagtcc
gacaccgcgatcccgaccatcctcgaaggcgacatcaaggacggcacccaggtcaccgtc
ggcggcatcctcgcgtcggtgaaccggaggatcaacaagaacggtctcacctgggcgtcc
gcgcagctcgaggatctgaccggcggtatcgaggtgctgttcttcccgcaggcctactcg
gtctacgggatggatgtcacggaggactccgtcgtgctcgtcaaggcgcgcgtgtcgatt
cgtgacgaccggatctcgctcatcgccaacgaccttgcggtgccggatctctcggcggtg
ggggtcgcgaagccgctggcggtcagtcttccgctgcgtcagtgcaccaaggacaagctc
ggtgcgctgcgtcaggtgctcacgcgccatccgggcacctcggacgtgcacgtgcggttg
atcggcggcaccgaggtcacgttgtggaaggtggacgacgtgctccgggtggaaccgtcg
tcggcgttgatgggtgatctcaaggcgctgctcggaccgagctgcctgtctgtgtga
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integrated database retrieval system
