Rhodococcus jostii: RHA1_ro01304
Help
Entry
RHA1_ro01304 CDS
T00382
Name
(GenBank) probable ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
rha
Rhodococcus jostii
Pathway
rha03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rha00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RHA1_ro01304
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rha03019
]
RHA1_ro01304
03400 DNA repair and recombination proteins [BR:
rha03400
]
RHA1_ro01304
Enzymes [BR:
rha01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
RHA1_ro01304
Messenger RNA biogenesis [BR:
rha03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
RHA1_ro01304
DNA repair and recombination proteins [BR:
rha03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
RHA1_ro01304
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_30
RecQ_Zn_bind
HEM4
Pribosyltran
KORA
Motif
Other DBs
NCBI-ProteinID:
ABG93128
UniProt:
Q0SH58
LinkDB
All DBs
Position
1375218..1377317
Genome browser
AA seq
699 aa
AA seq
DB search
MTTATEPALRDEAERLLRELAGEHATLRDDQWTAIEALVVGRRRALVVQRTGWGKSAVYF
IAAKLLRAHGHGPTVIVSPLLALMRNQVASAERAGVRAATINSGNVTEWDDIHARVADNE
LDVLLVSPERLNNPDFRDQVLPSLAADAGLVVVDEAHCVSDWGHDFRPDYRRIRTLIAEL
GEGIPVLATTATANDRVVSDVSTQLGVGGAETLVLRGGLERESLHLSVVQIPEATARAAW
LAQKLDSLPGSGIIYALTVSAARDLASLLSEQGHTVAAYTGQTDAAERETLEQDLLGNRV
KALVATSALGMGFDKPDLGFVVHLGAPSSPISYYQQVGRAGRSTDRAEVILLPGSEDKQI
WSYFASVAFPREHVVRRVIEVLDTDRPQSTQALEPLVELGRTRLEMVLKVLDVDGAVRRV
RGGWVGTGEPWTYDADRYERLERARESEQQAMIDYQRISTCRMAFLREQLDDPGLAAGTS
DCGRCDNCTGVRHDATVDAEAVQQTRTRLERPGVDLAPRKQWPTGLAKLGVALSGKITDG
PEPGRVLGRLSDLGWGQRLRSLLDEPDGPAPEAVLKACIQVLASWDWAERPTAVMAVESA
THPLLSASIAGQLAAVGRLTDLGVLRLRPEHPPVSAANSAYRVAGLVDAWEAPDLPAGAG
PVLLVDTLTDTGWTLTMAARTLRAAGAASVLPFALASLK
NT seq
2100 nt
NT seq
+upstream
nt +downstream
nt
atgacgaccgccaccgaacccgcactccgtgacgaggccgaacggctgctccgcgagctg
gcaggcgagcacgccaccctccgcgacgaccagtggacggcgatcgaggcgctcgtggtg
ggccgcagacgggcgctggtcgtccagcggacgggctggggcaagtcggcggtctacttc
atcgccgcgaagctcctgcgggcgcacgggcacggtcccacggtcatcgtgtcgccgctc
ttggcactcatgcggaaccaggtggcctccgccgagcgggcgggcgtgcgcgccgccacc
atcaactcgggaaacgtcaccgaatgggacgacatccacgcccgggtcgccgacaacgag
ctggacgttctgctggtcagccccgagcgtctcaacaatcccgacttccgcgaccaggtc
ctcccctccctcgccgccgacgcgggcctcgtcgtggtcgacgaggcgcactgcgtgtcg
gactggggtcacgacttccgccccgactaccggcggatccgcactctgatcgccgaactg
ggcgagggcatccccgtgctggccaccacggccacggcgaacgaccgcgtcgtctccgac
gtctccacgcagctcggagtgggcggcgccgaaactctcgtcctccgcggtggcctcgaa
cgggagtcgctgcacctgtcggtcgtgcagattccggaggccaccgcccgggcggcgtgg
ctcgcccagaagctcgacagcctgcccggctcgggcatcatctacgcactcaccgtgtcg
gcggcgcgggatctggcgagcctgctgtccgagcagggccacacggtcgccgcgtacacc
gggcaaaccgacgccgccgagcgcgagaccctcgagcaggacctgctcggcaaccgcgtc
aaggccctcgtcgcgacgtccgcgctcggcatggggttcgacaagcccgacctggggttc
gtcgtgcacctcggtgcgccctcgtcccccatctcctattaccagcaggtcgggcgcgcg
ggacggtccacagaccgcgccgaggtcatcctgctgcccggatccgaggacaagcagatc
tggagttatttcgcgtccgtggcgttcccccgcgagcacgtggtgcgccgggtgatcgag
gtcctcgacaccgaccggccgcagtccacgcaggcgctcgagccactggtggagctgggc
cgcacccggctggagatggtgttgaaggtcctcgacgtggacggtgccgtccgccgggtg
cgcggcggctgggtgggcaccggggagccctggacgtacgacgccgaccgctacgagcgg
ctcgagcgcgcccgcgagtccgagcagcaggcgatgatcgactaccagcggatcagcacg
tgccggatggcgttcctgcgcgagcagctcgacgacccgggtctggcggcgggaacctcg
gactgcggccggtgcgacaactgcaccggagtgcgccacgacgcgaccgtggacgccgag
gcggtgcaacagaccaggacgcgtctcgagcggccaggcgtggacctcgcgccccgcaaa
cagtggcctacgggcctcgcgaagctcggcgtggcgctgtccgggaagatcacggacggc
cccgaaccgggccgcgtcctgggccggctgtccgacctgggctggggtcagcggctgcgt
tccctgctcgacgaaccggacggacctgcgcccgaggccgtcctgaaggcctgcatccag
gtgctggcctcctgggactgggccgagcggcccaccgccgtcatggcggtcgagtccgcc
acccatccccttctgtcggcgtcgatcgcggggcagctcgccgctgtcggacgactcacc
gacctgggagttctgcggctgcgcccggagcatccgccggtgtccgcggccaactccgcc
taccgggtggccgggctggtcgacgcctgggaggcccctgaccttcctgccggcgccgga
ccggtgttgctcgtcgacaccctcacggacaccggctggaccctcacgatggccgccagg
acgctccgcgcggcgggtgccgcgtcggtcctccctttcgcgctcgcgagtctcaaatag
DBGET
integrated database retrieval system
