Rhodococcus jostii: RHA1_ro04353
Help
Entry
RHA1_ro04353 CDS
T00382
Name
(GenBank) DNA topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
rha
Rhodococcus jostii
Brite
KEGG Orthology (KO) [BR:
rha00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rha03032
]
RHA1_ro04353
03400 DNA repair and recombination proteins [BR:
rha03400
]
RHA1_ro04353
Enzymes [BR:
rha01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
RHA1_ro04353
DNA replication proteins [BR:
rha03032
]
Prokaryotic type
DNA Topoisomerases
RHA1_ro04353
DNA repair and recombination proteins [BR:
rha03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
RHA1_ro04353
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
Toprim_4
HC2
SPESP1
Motif
Other DBs
NCBI-ProteinID:
ABG96143
UniProt:
Q0S8J3
LinkDB
All DBs
Position
4584486..4587407
Genome browser
AA seq
973 aa
AA seq
DB search
MAKGDNGSAQGAAGASGQPRRLVIVESPTKARKIAPYLGKNYVVEASVGHIRDLPRGAAD
VPAKYKGESWARLGVNVDHDFEPLYVVSPEKKSKVTELKSLLKDADELFLATDPDREGEA
IAWHLLETLKPKIPVRRMVFHEITEPAIRAAAEDTRELDNDLVDAQETRRILDRLYGYEV
SPVLWKKVMPRLSAGRVQSVATRVIVQRERERMAFRSASYWDISATLDAGADASPRSFGA
RLVSVDGSRVATGRDFGADGQLKTSTVTVLDEARAQRLAESLAGVDLTVSSAESKPYTRK
PYAPFMTSTLQQEAGRKLRFTSERTMRIAQRLYENGYITYMRTDSTTLSSSAIAAARAQA
TELYGAEYVHDTPRQYTRKVKNAQEAHEAIRPAGDVFQTPGQLHSRLDTDEFRLYELIWQ
RTVASQMADARGTTLTLRITGTAGTGEECTFSSSGRTITFAGFLKAYVESVDEEAGGQSD
DAESRLPVLVEGQAVTATKLDPDGHTTNPPARYTEASLIKTLEELGIGRPSTYSSIIKTI
LDRGYVYKRGSALVPSWVAFAVIGLLEMHFGRLVDFDFTAGMEDDLDAIAGGREQRGNWL
SSFYFGGDHGAEGSVAREGGLKKMVGVNLEEIDAREVNSIRLFDDAEGREVHVRVGRFGP
YLERMVQNPDDPEGDLISQRANLPDDLPPDELTPEYAEKLFSTPQEGRKLGVDPLTGHEI
VAKEGRFGPYVTEILPEPEPEPEPAVVPVTDESGDGTTKTKTAAKKAPAKKAAAKKATGP
KPRTGSLLKSMDLATVTLDDALKLLSLPRVVGVDPESKEEITAQNGRYGPYLKKGTDSRS
LATEDQMFTVTLDEALKIYAEPKRRGRQAAATPPLRELGVDTVSEKPMVIKDGRFGPYVT
DGETNASLRKGDEVESITDARASELLADRRARGPVKKKAAAKKAPAKKAAKKTAAKKAPA
KKAASKKAADKKA
NT seq
2922 nt
NT seq
+upstream
nt +downstream
nt
gtggctaaaggggacaacggcagtgcacagggtgcggcgggagcgtccggccagcctcgc
cgcctcgtgatcgtcgagtcgccgaccaaggcccgcaagatcgccccgtacctcggaaag
aactatgtcgtcgaggcgtcggtcggtcacatccgcgaccttccgcgcggagccgcagac
gtcccggccaagtacaagggtgaatcctgggcgcggctcggagtcaacgtcgaccatgat
ttcgaacccctctacgtggtcagtccagagaagaagtccaaggtcacggagctgaagagc
ctcctcaaggacgccgacgaactcttcctcgccaccgaccccgaccgtgagggcgaagcg
atcgcctggcatctcctcgagacgctcaagccgaagatcccggttcgccggatggtcttc
cacgagatcaccgagccggccatccgcgccgcggccgaggacacccgcgaactcgacaac
gacctggtcgacgcgcaggagacccgccgcatcctcgaccgtctgtacggctacgaggtc
agccccgtgctgtggaagaaggtcatgccgaggctgtcggcaggccgagtgcagtccgtc
gccacccgtgtcatcgtgcagcgggaacgtgagcggatggcgttccgctcggcgtcctac
tgggacatctccgccaccctcgacgccggcgctgacgccagcccccgcagtttcggggcg
cgtctggtgagcgtcgacggctcccgggtcgccaccggccgcgacttcggcgccgatggc
cagctgaagacgagcaccgttacggttctggacgaggcgcgagcgcagcgtctggccgag
tccctcgccggtgtcgacctcaccgtctcctccgccgagagcaagccgtacacccgcaag
ccgtacgcgccgttcatgacgtcgacgctgcagcaggaggcgggccgcaagctccgcttc
acgtccgagcggaccatgcgcatcgcgcagcggctgtacgagaacggctacatcacctac
atgcgtaccgactcgacgaccttgtcgtcgtcggcgatcgctgccgcccgcgcgcaggcc
accgagttgtacggcgccgagtacgtgcacgacacaccgcgccagtacacgcgcaaggtc
aagaacgcgcaggaggcgcacgaggccatccgcccggccggtgacgtgttccagacccct
ggtcagctgcactcccgcctcgacaccgacgagttccgcctgtacgagctgatctggcag
cgcaccgtggcgtcgcagatggcggacgcgcggggcacgacgctcaccttgcggatcacc
ggaaccgcgggcaccggcgaggaatgcaccttctcctcgtcgggccgcaccatcacgttc
gccggattcctgaaggcctacgtggagagcgtcgacgaggaggccggcggccagtccgac
gacgccgagtcgcgcctgccggtgctcgtcgagggccaggcggtcaccgccaccaagctc
gatcccgatggccacaccacgaacccgcccgcccgctacaccgaggcgagcctgatcaag
accctcgaagagctgggcatcggccgcccgtccacctactcgtcgatcatcaagaccatt
ctcgatcgcggatatgtctacaagcgcggcagtgcgctggtcccgtcctgggtggcgttc
gccgtcatcggtctcctcgagatgcacttcgggcggctggtggacttcgacttcaccgcc
gggatggaagacgatctcgacgcgatcgccggtggccgggaacagcgcggcaactggttg
agcagtttctacttcggcggcgatcacggcgccgagggttcggttgcccgtgagggcggc
ctgaagaagatggtcggggtcaacctcgaggagatcgacgctcgcgaggtcaactcgatc
aggctcttcgacgacgccgagggacgggaagtgcacgtccgcgtcggacggttcggtccg
tacctcgagcggatggtccagaacccggacgaccccgagggcgacctcatttcccagcgg
gccaacctgcccgacgaccttccgccggacgagctgacaccggagtacgcggagaagctc
ttttcgacgccgcaggagggtcgcaagctgggcgtcgacccgctcaccggccacgagatc
gtcgcgaaggagggccgcttcggcccctacgtcaccgagatccttcccgagccggaaccg
gagcccgaaccggcagtggtgccggtgacggacgaatccggcgacgggacgaccaagacg
aagacagctgccaagaaggcgcccgcgaagaaggcggcggcgaagaaggccaccggtccg
aagccgcggacgggttcgctgctcaagtcgatggacctggcgacggtgaccctcgacgac
gccctgaagctgctgtcgctgccgcgcgtcgtgggtgtcgatccggagtccaaggaagag
atcaccgcgcagaacggccgctacggcccgtacctgaagaaggggacggattcgcggtcc
ctcgccaccgaggaccagatgttcacggtgaccctcgacgaggcgctgaagatctatgcg
gagcccaaacgccgcggacggcaggctgcggccaccccgccgctgcgtgagctgggcgtc
gacacggtcagcgagaagccgatggtgatcaaggacggccggttcgggccgtacgtgacc
gacggtgaaaccaacgccagcctccgcaagggcgacgaggtggagtccatcaccgacgcc
cgcgcttcggaactgctggcggatcggcgtgcccgcggtcccgtcaagaagaaggccgcc
gcgaagaaggcgcccgccaagaaggctgcaaagaagaccgccgccaagaaggcgccggcc
aagaaggcggcctcgaagaaggcagcggacaagaaggcgtga
DBGET
integrated database retrieval system
