Rhodococcus jostii: RHA1_ro06791
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Entry
RHA1_ro06791 CDS
T00382
Name
(GenBank) ATP-dependent helicase hrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
rha
Rhodococcus jostii
Brite
KEGG Orthology (KO) [BR:
rha00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rha03019
]
RHA1_ro06791
Enzymes [BR:
rha01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
RHA1_ro06791
Messenger RNA biogenesis [BR:
rha03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
RHA1_ro06791
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
HA2_C
Helicase_C
DEAD
AAA_19
AAA_22
nSTAND3
HA2_N
AAA_30
SLFN-g3_helicase
NACHT
AAA_25
T2SSE
TsaE
PhoH
NTPase_1
Motif
Other DBs
NCBI-ProteinID:
ABG98563
UniProt:
Q0S1M3
LinkDB
All DBs
Position
complement(7300317..7304207)
Genome browser
AA seq
1296 aa
AA seq
DB search
MSTTAPSRRELKNSLGELTLRDEHRLRRRLDRARTPDALASLSDEIAAARGRIARRLDSV
PVIEYPDSLPVSQRRDDIAKAIAENQVVIVAGETGSGKTTQIPKICLELGRGVRGLIGHT
QPRRLAARTVAERIAEELRSELGETVGYTVRFTDQVSDGTLVKLMTDGILLAEIQRDRML
RRYDTLIIDEAHERSLNIDFILGYLRQLLPRRPDLKVIITSATIDPERFAQHFATDDGVP
APIVEVSGRTFPVEMRYRPLTVDVGDQTFDRDPVDAVCEAVEELSGEGDGDILVFLSGER
EIRDTADALRDRRLRGTEIVPLYARLSAAEQHKVFTPHTGRRVVLSTNVAETSLTVPGIR
YVVDPGTARISRYSVRTKVQRLPIEPISQASARQRSGRCGRVAEGICIRLYSEEDFEARP
AFTEPEILRTNLASVILQMTALGLGDIAAFPFVQPPDPRAVRDGIGLLEELGAIERKAQN
EQPVLTAVGRELAQIPVDPRMARMLVEAHRNGCLAEVLVIVSALSIQDVRERPAEFQQAA
DEKHARFTVENSDFLAFLELWKYLREQRNELSSNQFRKMCRNEFLHWLRIREWQDLHGQL
RQITRGLGWDTTDTPAGEAAIHQSLLAGLLSHIGLREGDKRDFLGARGSRFAVFPGSSLF
KKPPRWVMAAELVETSRLWARMSARIEPEWAEKLAPHLVKRTYSEPHWSSKRGAAMAYER
VTLYGIPLVARRAVTYSTIDPETSRDLFIRHALVQGEWQTQHKFFHANRALLEDVEELEH
RARRRDILVDDDTLYDFYDQRVGPEAVSARHFDSWWKVARRKNPDLLTFTQATVVNAESA
AVLGGEYPDAWRQGDMQFPLTYQFEPGTEDDGVTARIPIALLAGLRPVGFDWLVPGMRVE
LVTALIKTLPKTLRRQVVPAPDFAAAALAAVKPRSEPLTMAMARELSRLGACRIDPKDFD
VTALPDHLRMTFAAVDEKGAVLGRDKDLVSLRKSLAPRVEVEVAKAASNSERPPALTWTP
ATLGSLEATVTRELGGQKVTGYPALVPEGDGVAVRVLSTAAAQRSAMRAGTRRLLLAAVP
TQAKTVTSGLSNAQRLALGQNPDGSLDALIDDCRNAAANQVIAAHGTPVRTPQEFDALVA
TARAEMARNVAVLLRLVSPVLEADHRLTVVLERATGEAADDVREQRQSLLFPGFVADIGA
TRLRELPRYLAAAAARLDALPGSAPRDQKGMDVLDRVYAGYERMLAGLPEERQHTPEVDA
IHWMIEELRVSLFAQTLGTPIPVSEKRVISAMEKVR
NT seq
3891 nt
NT seq
+upstream
nt +downstream
nt
atgtccaccacagcacccagccggcgggaactgaagaacagcctcggcgaactcactctg
cgcgacgaacaccggctccgccggcgactcgaccgtgcgcgcacacccgacgcactcgcg
tccctgtccgacgagatcgccgccgcccgcggacgcatcgcacgaagactcgacagcgtc
cccgtcatcgagtaccctgactcgctgcccgtcagccagcgccgcgacgacatcgcgaag
gcgatcgcggagaaccaggtcgtcatcgtcgccggcgagacaggctcgggcaagacgacg
cagatcccgaagatctgcctcgaactcggccgcggcgtccgcggcctcatcggacacacc
cagccccgccgtctcgcggcgcggacggttgccgaacgcatcgccgaggaactccgcagc
gaactcggtgagaccgtcggctacaccgtgcgattcaccgaccaggtgtcggacggcacg
ctggtgaaactgatgaccgacggaatcctgctcgccgagatccagcgcgaccggatgctg
cgccggtacgacacgctcatcatcgacgaggcccacgaacgcagcctcaacatcgacttc
atcctcggatacctgcgacagctactcccgcgccggcccgatctgaaagtgatcatcacc
tcggccacgatcgatccggaacgcttcgcgcagcacttcgcgaccgacgacggggtgccc
gcgccgatcgtcgaggtgtccggacgcaccttccccgtcgagatgcgttaccgcccactc
acggtggacgtgggcgaccagaccttcgaccgcgaccccgtcgacgcggtgtgcgaggcg
gtcgaggaactgtccggcgagggcgacggcgacatcctggtcttcctctccggcgaacgg
gagatccgcgacaccgccgacgcgctccgcgaccgcagactgcgcggcaccgagatcgtg
cccctgtacgcccggctgtcggcggccgaacagcacaaggtgttcacgccccacaccggg
cggagggtcgtgctgtcgacgaacgtcgcggaaacctccctcaccgtgcccggcatccgg
tacgtcgtggacccgggaaccgcccgcatctcccgctactcggtgcgcaccaaggtgcag
cgcctgcccatcgaaccgatctcgcaggcgtccgcccgccagcgttccgggcgttgcggc
cgtgtggccgagggcatctgcatccgcctctactcggaagaggacttcgaggcgcggccc
gcgttcaccgaaccggagatcctgcgcaccaacctcgcatccgtcatcctgcagatgacg
gcgctcggcctcggcgacatcgccgcgttcccgttcgtccagccgcccgacccgcgggcc
gtccgcgacggcatcggcctgctcgaggaactcggggcgatcgaacggaaagcccagaac
gagcaacccgtcctcaccgctgtcggacgcgaactcgcgcagatccccgtcgatccgcgc
atggcccggatgctcgtcgaggcacaccggaacggctgcctggccgaggtgctggtcatc
gtctcggccctctcgatccaggacgtgcgggaacgtcccgccgaattccagcaggcagcg
gacgagaagcacgcccggttcaccgtggagaactctgacttcctcgccttcctcgaactg
tggaagtacctgcgcgagcagcggaacgagttgtcgtccaaccagttccgcaagatgtgc
cgaaacgagttcctgcactggctgcgcatccgcgaatggcaggacctgcacggccagctc
cggcagatcacccgcgggctcggctgggacaccaccgataccccggccggcgaggctgcg
atccaccagtccctcctcgcgggactgctgtcgcacatcggactccgagagggtgacaaa
cgagacttcctcggggcccgcggaagccgattcgcggtcttccccggctcgagcctgttc
aagaagcccccgcgatgggtcatggccgccgaactggtcgagacgtcccggctgtgggcg
cggatgtcggccaggatcgaacccgagtgggcggagaagctggcgccgcacctcgtgaaa
cgcacctactccgagccgcactggtcgtcgaagcgcggcgccgccatggcctacgaacgc
gtgacgctgtacgggatcccgctcgtcgcccggcgtgcggtcacctacagcaccatcgat
cccgagacgtcccgggacctgttcatccgccacgctctggtgcagggcgaatggcagacg
cagcacaagttcttccacgccaaccgcgccctcctcgaagacgtcgaggaactcgagcac
cgcgcccgcaggcgcgacatcctcgtggacgacgacaccctctacgacttctacgaccag
cgcgtcggcccggaagcggtctccgcccggcatttcgactcctggtggaaggtcgcccgc
cgcaagaaccccgacctactcacgttcacccaggcaacggtcgtcaacgccgagtccgcc
gcagtactcggcggcgagtaccccgacgcctggcgccagggcgacatgcagttccccctc
acctaccagttcgagcccggcaccgaggacgacggcgtcaccgcccgcatcccgatcgcg
ctgctggcgggcctgcgcccggtcggcttcgactggctggtccccggcatgcgcgtcgaa
ctggtcaccgccctgatcaagacgctcccgaagacccttcgccgacaggtggttccggca
ccggacttcgcggccgccgcactggccgccgtgaaaccccgctccgaaccgctcaccatg
gcgatggcccgcgaattgtcgcgactcggcgcctgtcgcatcgatcccaaggacttcgac
gtcaccgcgctccccgaccatctgcgcatgacgttcgccgccgtggacgagaaaggtgcc
gtcctcggccgggacaaggacctcgtgtcgctgcgcaagtcgctcgctccccgcgtcgag
gtggaggtggcgaaggcggcctcgaattcggaacggccgcccgcactcacgtggaccccc
gccaccctcggttcactcgaagccaccgtgacacgcgaactcggcggccagaaggtcacc
ggctaccccgccctggtcccggagggtgacggtgtcgccgtccgcgtgctcagcaccgcg
gcggcgcaacgatccgctatgcgcgccggaacgcggcggctgctgctcgccgccgttccc
acccaggcgaagacggtcacgtcggggctgagcaacgcacagcgactggcgctcggacag
aaccccgacggcagcctcgacgcactgatcgacgactgccgcaacgcggccgcgaaccag
gtgatcgccgcgcacggcacgccggtgcgcaccccgcaggagttcgacgccctcgtagcg
acggcgcgcgccgagatggcccggaacgtggcggtgctcctgcgactggtgtcgccggtg
ctcgaagcggaccaccggctcaccgtggtgctggaacgcgcgaccggtgaggccgccgac
gacgtgcgcgaacagcggcagtcgctgctgtttcccggattcgtcgccgacatcggtgcc
actcgcctccgtgaactgccccgctacctcgccgctgcggcggcccgtctcgacgctctt
cccgggagcgcaccgcgcgaccagaagggaatggacgtcctcgaccgggtgtacgccgga
tacgaacgcatgctcgcgggcctgccggaagaacgacagcacacacccgaggtcgacgcc
atccactggatgatcgaggaactgcgggtcagcctgttcgctcaaacactcggaacaccg
atccccgtctcggagaagcgcgtgatcagtgcaatggagaaggtgcgctga
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