Rodentibacter haemolyticus: IHV77_01240
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Entry
IHV77_01240 CDS
T07810
Symbol
rnb
Name
(GenBank) exoribonuclease II
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
rhae
Rodentibacter haemolyticus
Brite
KEGG Orthology (KO) [BR:
rhae00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
rhae03016
]
IHV77_01240 (rnb)
Enzymes [BR:
rhae01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
IHV77_01240 (rnb)
Transfer RNA biogenesis [BR:
rhae03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
IHV77_01240 (rnb)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
S1
OB_RNB
CSD2
S1CSD-TOTE-2
DUF2274
DUF3859
Motif
Other DBs
NCBI-ProteinID:
QPB42783
LinkDB
All DBs
Position
246934..248913
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AA seq
659 aa
AA seq
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MFQDNPLLAQLKQQIHDSKERVEGIVKGTDKAYGFLECDKKTYFIAPPAMKKVMHGDKIS
ATIEKQGDKEQAEPESLIEPMLTRFIAKVRFNKDKKLQVLVDHPNINQPVGAQQAKAVKE
ELQEGDWVVANLKTHPLRDDRFFYATINQFICRADDEFAPWWVTLARHEQSRYPVQGAEH
YEMLDQQARKDLTALHFVTIDSESTQDMDDALYIEPIEQNGEQSGWKLVVAIADPTAYIA
LDSQIEKDAKQRCFTNYLPGFNIPMLPRELSDELCSLMANEIRPALVCYIETDLQGNITA
KPHFVSAHVQSKAKLAYNNVSDYLEQTPNAWQPETNEIAEQIHRLHQFTLSRINWRKTHS
LLFKEKPDYSFVLAENGKVQEIKAEHRRIANQIVEESMIIANICAAQFLNENAQTGIFNT
HSGFDKKFLENAHHFLMANLSNEENQAELAKRYSVENLVTLNGYCQMRHDIEPIEGDYLE
LRLRRYLTFAEFKAELAPHFGLGLEGYATWTSPIRKYSDMVNHRLIKAVLTQQPCEKPQD
EVLTRLQEARRQNRLVERDVADWLYCRYLADKVAENAEFEAEVQDVMRGGLRVQLLENGA
SMFVPASTIHNNKEEMLVNSDELALYIKGERAYKIGDLIKVKLTEVKEETRSIISSVIF
NT seq
1980 nt
NT seq
+upstream
nt +downstream
nt
atgtttcaagataatcctctacttgcacaactcaaacaacaaattcacgatagcaaagaa
cgtgtggaaggcatcgtaaaaggcacggataaagcctacggttttttagaatgtgataaa
aaaacctatttcattgccccacctgcgatgaaaaaagtgatgcacggcgataaaatttca
gccaccattgaaaaacaaggcgataaagaacaagccgagccggaatcgctaatcgaaccg
atgctcacgcgttttatcgctaaagtgcggttcaataaagacaaaaaattacaggtactc
gtggatcacccaaacataaatcaaccggttggtgcacaacaagcgaaagccgtaaaagaa
gaactgcaagaaggcgactgggtggtcgccaatttaaaaacccatccgttgagagatgat
cgttttttctatgcaaccattaatcaatttatctgccgagccgatgatgaatttgcacct
tggtgggtaaccctcgctcgccatgagcaatcacgttatccggtacaaggggcggagcat
tatgaaatgttggatcaacaagctcgcaaagatctgaccgcacttcatttcgtcaccata
gacagtgaaagtacgcaagatatggatgatgcgctttacattgaaccgattgaacaaaat
ggcgaacaaagcggctggaaactggttgtggcgattgccgatccgacagcctatatcgca
ctagattctcaaattgaaaaagatgccaaacagcgttgcttcaccaactacttaccgggt
ttcaacattccaatgttaccccgtgaattgtctgacgaactttgttccttaatggcaaat
gaaattcgcccggcattggtttgctatatcgaaacggacttacaaggtaacatcacggca
aaaccgcactttgtttccgcccacgtacaatcgaaagcgaaattggcttataacaatgtt
tccgattatttggaacaaaccccgaacgcatggcagccggaaaccaacgaaattgccgaa
caaattcaccgtttgcaccaattcaccctttcacggataaactggcgcaaaacccattct
ttattatttaaagaaaaaccggactactcttttgtgcttgctgaaaacggtaaagtacaa
gaaatcaaagccgaacatcgccgtattgcgaatcaaattgtggaagaatcgatgattatt
gcgaacatttgtgctgcgcaatttctgaatgaaaatgcacaaacggggatcttcaacaca
cacagtggatttgataaaaaattcttagaaaatgcccatcatttcttaatggcaaattta
agcaatgaagaaaaccaagcagaactggcaaaacgttattctgtggaaaatctggtaact
ttaaacggctattgccaaatgcgccacgatattgaaccgattgagggcgattatttggag
cttcgtttacgccgttatttaacctttgccgaatttaaagccgaattagcaccgcacttt
ggcttaggattagagggctatgcgacttggacatcaccgattcgtaaatactcggatatg
gtgaatcaccgtttaatcaaagccgttctcacccaacagccctgcgagaaaccgcaagat
gaggtgctgactcgtttacaagaagcacgccgccaaaatcgtttagttgaacgtgatgtt
gcagattggctatattgccgctatcttgccgataaagttgctgaaaatgcggaatttgag
gcggaagtacaagatgtaatgcgtggcggtttacgtgtgcagttgttagaaaatggcgca
tcaatgttcgttcccgcctcaactattcacaataacaaagaagaaatgttggtaaattcg
gacgaactcgctctttatattaaaggtgagcgtgcttataaaatcggtgatctgataaaa
gtaaaactcacggaagtgaaagaagaaacaagaagtatcattagttctgtgattttctag
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