Rodentibacter haemolyticus: IHV77_04900
Help
Entry
IHV77_04900 CDS
T07810
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
rhae
Rodentibacter haemolyticus
Pathway
rhae03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rhae00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
IHV77_04900
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rhae03019
]
IHV77_04900
03009 Ribosome biogenesis [BR:
rhae03009
]
IHV77_04900
Enzymes [BR:
rhae01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
IHV77_04900
Messenger RNA biogenesis [BR:
rhae03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
IHV77_04900
Ribosome biogenesis [BR:
rhae03009
]
Prokaryotic type
rRNA helicases
IHV77_04900
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
SWC7
Cas3-like_C_2
UvrA_inter
DUF4487
Motif
Other DBs
NCBI-ProteinID:
QPB43424
LinkDB
All DBs
Position
1023018..1024835
Genome browser
AA seq
605 aa
AA seq
DB search
MTDKITFNDLGLPEFILKAVSDLGFETPSPIQQTCIPHLLNGNDVLGMAQTGSGKTAAFA
LPLLAQIDTAAKHPQMLVMAPTRELAIQVADACEQFVKYAHGTRIVTLYGGQRYDIQLRA
LKQGAQVIVGTPGRILDHIRRGTLDLSELRFIVLDEADEMLRMGFIDDVETVMAELPENH
QTALFSATMPEPIRRITKRFMNDPKEVKIKVNNENAPDIEQSCWYVHGVRKNEALLRFLE
VEDFDAAIIFARTKTATLDITELLEKNGFRSAALNGDMTQQLREQTLDRLRNGSLDIVVA
TDVAARGIDIERISLVVNYDITLDAESYIHRIGRTGRAGRSGRALLFVEPRERRLLRNIE
QLMKKPINEVELPNHFVLQECRRKKFVAKITKQLEHHDLEQYRSLLEDLFTADQDQEDIA
AAMLMLLQGKQKLILPPDPPMEKRRRNDRDRRENPRSAERRGERKGYGNPQPMDLYRIEV
GRVDGVEVRHIVGAIANEGDIDSRYIGHIKLYDEHSTVELPQGMPKELLQQFGKTRVLNK
QMQMSFLGAVKSDGNRGGDDFNGKRRAGRGNDFGRERSRNERGGRKFNEKSNRSFSDKPR
KVRRG
NT seq
1818 nt
NT seq
+upstream
nt +downstream
nt
atgactgacaaaatcacttttaatgacttaggcttacctgagttcatcttaaaagctgtt
tcagacttaggttttgaaaccccttccccaattcaacaaacttgtattccgcacttgctc
aatggcaatgatgtgctgggtatggcacaaaccggtagcggtaaaaccgccgcatttgct
ttaccgcttttagcacaaatcgatacggcggcaaaacacccgcaaatgttagtgatggca
ccaacccgagaacttgctatccaagtagcggatgcttgtgaacaatttgtgaaatatgcg
catggtacacgcattgttaccctttacggcggccaacgctatgacattcaacttcgcgct
ttaaaacagggagcgcaggtgattgtcggtacaccggggcgtattctcgatcacattcgc
cgcggtactttagacctctccgagctccgttttatcgtgcttgatgaagccgatgaaatg
ttacgaatgggctttattgatgatgtagaaaccgtgatggcggaattgccggaaaatcat
caaaccgccctcttctccgcaacgatgccggaacctattcgccgcataaccaagcgtttt
atgaacgatccgaaagaagtgaagatcaaagtcaataacgaaaatgcaccggacattgag
caaagttgctggtatgtacatggggtacgtaaaaacgaagcgcttcttcgctttttagaa
gtagaagattttgatgcggcaatcattttcgcccgtaccaaaacggcaacactggatatt
accgagctgcttgaaaaaaacggcttccgttcagccgcccttaatggcgatatgacacaa
caattgcgtgaacaaaccctcgatcgtttgcgtaacggcagccttgatattgttgtggca
accgatgttgcagcccgtggtatcgacattgaacgtatcagccttgttgtaaactacgat
attacccttgacgcggaatcttatattcaccgtatcggccgtaccggtcgtgccggtcgt
tccggccgtgcactactgtttgtcgaaccacgtgaacgccgcttacttcgcaatatcgaa
cagttaatgaaaaaaccgatcaatgaagtggaattgccaaatcatttcgtgttgcaagaa
tgccgccgaaagaaattcgtggcgaaaatcaccaaacagcttgagcatcacgacctggaa
caatatcgtagcttgctggaagatttatttaccgccgatcaagatcaggaagatattgca
gcagcaatgttaatgttacttcaaggtaaacaaaaacttatccttcctcctgatccacca
atggaaaaacgccgccgcaacgatcgtgatcgccgtgaaaatcctcgttctgcggaacgt
cgcggtgaacgcaaaggctacggcaatccgcaaccaatggatttatatcgcattgaagtg
ggtagagtcgatggtgtggaggttcgtcatattgtgggcgcgattgcaaatgagggcgat
attgatagccgctacattggtcatatcaaactctatgatgaacattctaccgtagaatta
ccacaaggaatgccgaaagaattacttcaacaatttgggaaaacccgcgtgttgaataaa
caaatgcaaatgtcatttcttggtgcggtaaaatctgacggtaaccgcggcggtgatgat
ttcaacggtaaacgccgcgcagggcgtggcaatgactttggtcgtgagcggagtcgtaac
gagcgtggaggacgtaaatttaacgaaaaatccaaccgctcttttagcgacaaaccacgc
aaagtacgccgaggctaa
DBGET
integrated database retrieval system
