Rodentibacter haemolyticus: IHV77_06930
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Entry
IHV77_06930 CDS
T07810
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
rhae
Rodentibacter haemolyticus
Pathway
rhae03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
rhae00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
IHV77_06930 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rhae03021
]
IHV77_06930 (rpoC)
03400 DNA repair and recombination proteins [BR:
rhae03400
]
IHV77_06930 (rpoC)
Enzymes [BR:
rhae01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
IHV77_06930 (rpoC)
Transcription machinery [BR:
rhae03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
IHV77_06930 (rpoC)
DNA repair and recombination proteins [BR:
rhae03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
IHV77_06930 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
QPB41676
UniProt:
A0ABX6V038
LinkDB
All DBs
Position
1466765..1471033
Genome browser
AA seq
1422 aa
AA seq
DB search
MKDLVKFLKAQSKTSEDFDVIKIGLASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCA
RIFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPVAHIWFLKS
LPSRIGLLLDMPLRDIERVLYFEMYIVTEPGMTDLERGQLLTEEQYLEAEDRWQDEFEAK
MGAEAIQDLLKGMDLEVECEKLREELQETNSETKRKKITKRLKLLEAFVQSGNKPEWMVM
TVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLIAPDIIVRNEKRML
QESVDALLDNGRRGRAITGSNRRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGP
YLHLHQCGLPKKMALELFRPFIYAKLESRGYATTIKAAKKMVEREDAIVWDILAEVIREH
PILLNRAPTLHRLGIQAFEPILIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLTLEAQLE
ARALMMSTNNVLSPANGDPIIVPSQDVVLGLYYMTREKVNGKGEGMLLQDPREAEKAYRT
GQAELHSRVKVRVTEYVKNEAGEFDAKTTLTDTTIGRAILWMIAPQGMPYSLFNQTLGKK
AISKLINEAYRRLGLKEAVMFADQIMYTGFAYAARSGSSVGIDDMVIPEKKYEIISAAEE
EVAEIQEQFQSGLVTAGERYNKVIDIWAAANERVAKAMMENLSTEEVINREGNPEKQASF
NSIFMMADSGARGSAAQIRQLAGMRGLMARPDGSIIETPITANFREGLNVLQYFISTHGA
RKGLADTALKTANSGYLTRRLVDVAQDLVIIEDDCGTHEGLVMTPLIEGGDEKVPLRELV
LGRVAAEDIYKPGTEEVLIARNTLLDEKLCDVLDENSVDSVKVRSVVTCDTDFGVCAKCY
GRDLARGHLINQGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASAAAKESSVQVKNTGTLH
LANAKFVTNDEGKLVLTSRNTELTVTDAFGRTKEHYKVPYGAVLNKADGQEVNAGETVAN
WDPHTMPVVSEVSGFVKFIDIVDGLTVTRQTDELTGLSSIVVQDVGERATAGKDLRPTIK
LVDAKGNDIFLPETDVIAQYFLPGKAIVSLDDGAAVRVGEPLARIPQESVGTKDITGGLP
RVADLFEARKPKEPAILAEISGVVSFGKETKGKRRLLITPIEGEVYEEMIPKWRQLNVFE
GEMVQRGDVISDGAETPHDILRLRGVRAVTEYIVNEVQDVYRLQGVKINDKHIEVIVRQM
LRKAIITNAYDSEFLEGEQVEVARVKIVNRKREAEGKPPVEFERELLGITKASLATESFI
SAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGFAYHQNRIKNRQKALESS
VKAIETPASSFVTDADIEAEFEFVADDATQSLAALLNSEMED
NT seq
4269 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagacttagttaagtttttaaaagcacagtcaaaaaccagtgaagattttgatgtg
attaaaattgggttagcctcaccggatatgatccgctcatggtcgttcggtgaagtaaaa
aaacctgaaaccattaactaccgtacattcaaacctgaacgtgacggtcttttctgcgca
cgtatcttcgggccggtaaaagactacgaatgtttatgtggtaaatataaacgtttaaaa
catcgcggtgtaatttgtgaaaaatgtggtgtggaagttacccaaactaaagttcgtcgt
gaacgtatgggacacattgaattagcatcacccgtagcacacatttggtttttaaaatca
cttccgtcccgtatcggtttattacttgatatgccgttacgcgatattgagcgtgtactt
tattttgaaatgtacatcgtgaccgagccgggtatgacggatttagagcgcggtcaattg
ttaaccgaagaacaataccttgaggcagaagatcgctggcaagatgaatttgaagcgaaa
atgggggcggaagctatccaagatctcttaaaaggtatggatcttgaggtggagtgtgaa
aaattacgtgaagaattgcaagaaaccaattctgaaaccaaacgtaagaaaatcactaaa
cgcttaaaattattagaagccttcgttcagtccggcaataaaccggaatggatggtgatg
accgtattacctgtgcttccgcctgatttacgtccgttagtaccgcttgatggtgggcgt
tttgctacttcggatttgaacgacttatatcgccgcgttattaaccgtaacaatcgttta
aaacgtttattagatttaatcgcgccggatattatcgtacgtaacgaaaaacgtatgttg
caagaatctgtagatgcgctattggataacggtcgccgtggtcgtgcgatcaccggttct
aatcgccgtccgttgaaatcattagcggatatgattaagggtaaacaaggtcgtttccgt
caaaacttacttggtaaacgtgtggattactccggtcgttccgtaatcaccgtaggacca
tacttacatttacaccaatgcggtttgccgaaaaaaatggcattggaattattccgtccg
tttatctatgcgaaattagaaagccgtggttatgcaaccaccattaaagcggcgaagaaa
atggttgagcgtgaagatgctatcgtgtgggatattcttgcggaagtgattcgcgaacac
ccgattctattaaaccgtgcgccgacacttcaccgtttaggtatccaagcctttgaaccg
attttgatcgaaggtaaagcgattcaattacacccgcttgtttgtgcggcgtttaatgcg
gacttcgatggcgaccaaatggcggttcacgttccattaacgttagaagcacagctggaa
gcgcgtgcgttgatgatgtcaaccaacaacgtactttctccggcaaacggtgatccgatt
atcgttccatcgcaagacgtggtgttgggtctttactatatgacccgtgaaaaagtaaac
ggtaaaggcgaaggaatgttattacaagacccacgcgaagcggaaaaagcatatcgcacc
ggtcaagcggaattacattctcgcgtaaaagtgcgtgttaccgaatatgtgaaaaatgaa
gcgggcgaatttgatgcgaaaaccacattgactgataccactatcggccgtgcaattttg
tggatgattgctccgcaaggtatgccgtattcattattcaaccaaacattaggtaaaaaa
gccatttcaaaattgattaacgaggcttaccgccgtttaggcttgaaagaagcggtaatg
tttgcagaccaaattatgtacaccggttttgcttacgcagcacgttctggttcatctgtc
ggtattgacgatatggtgattcctgagaagaaatacgaaattatttctgcagcggaagaa
gaagtggcggaaattcaagaacaattccaatcaggtcttgttaccgcaggtgaacgttat
aataaagtaatcgatatttgggccgcagcgaatgaacgcgtcgcaaaagcaatgatggaa
aacctttcaacggaagaagttatcaaccgtgaaggtaatcctgaaaaacaagcgtcattc
aatagtatctttatgatggcggattccggtgcgcgtggttctgcggcacagattcgtcag
ttagccggtatgcgtggtttgatggctcgtccggacggttcgattatcgaaacgccaatt
actgcgaacttccgtgaaggtttgaacgtattgcagtactttatttcaacccacggtgca
cgtaaaggtttggcggataccgcattgaaaacggcaaactccggttatttgacccgtcgt
ttggttgatgttgcgcaagacctggtgatcattgaagacgactgtggtacgcacgagggc
ttggtaatgaccccgttaatcgaaggtggtgatgaaaaagttccgcttcgcgagttagta
ttaggtcgtgttgctgcggaagatatttacaaaccgggtacggaagaagtcttaattgcg
cgcaacaccttattagatgaaaaactctgtgatgtgttagatgaaaactccgtggacagc
gtaaaagtgcgctcggtggtaacctgtgataccgacttcggtgtgtgtgcgaaatgttat
ggtcgcgacttagcacgtggtcacttgatcaaccaaggtgaagctatcggtgttattgcg
gcacaatcaatcggtgaaccgggtacacagttaaccatgcgtacgttccatatcggtggt
gcggcatctgcggcggcgaaagaatctagcgtacaggtgaaaaataccggtactttacat
ttagctaatgcaaaattcgtaacgaatgatgaaggcaaattagtcttaacttcacgtaac
acagaattaacggttacagatgcattcggtcgtaccaaagaacattataaagtgccttac
ggtgcggtattgaataaggctgacggccaagaagtaaatgcaggcgaaaccgttgcgaac
tgggatccgcataccatgccggttgtctccgaagtttcaggttttgtgaaattcattgat
atcgtggacggtttaaccgtaacacgtcaaaccgatgaattaaccggtctttcctctatt
gtggtacaagatgtcggtgaacgtgcaacggcgggcaaagatttacgtccaaccattaaa
ttggttgatgcaaagggtaatgacattttcttacctgaaaccgatgttatcgcacaatac
ttcttaccgggtaaggctatcgtaagtttggatgacggtgcagcggtgagagtaggtgaa
ccattggcacgtattccgcaagaatccgtggggacgaaagatattaccggtggtcttcca
cgcgtagcggatctctttgaagcgcgtaaaccgaaagagcctgcaattttggcagaaatc
tcaggtgtcgtctcattcggtaaagaaaccaaaggcaaacgccgtctattgattacgcca
attgaaggtgaagtgtacgaagaaatgattccgaaatggcgtcagctcaacgtatttgaa
ggtgaaatggtacagcgtggtgatgtgatctccgatggtgccgaaactccgcacgatatt
ttacgtttacgtggcgtacgcgctgtaaccgaatatatcgtgaacgaagtgcaagatgtt
taccgcttacaaggggtaaaaatcaacgataaacacattgaggttatcgttcgccaaatg
ttgcgtaaagcgattatcaccaacgcttatgattccgagttcctagaaggggaacaagtg
gaagtggcgcgcgtgaaaatcgtaaaccgtaaacgtgaagcagagggcaaaccaccggtt
gaattcgagcgcgaattattgggtatcaccaaagcctctcttgcgacggaatccttcatt
tctgcagcatcgttccaagaaacaacccgtgtgttaacggaagcggcggttgcaggtaaa
cgtgatgaattacgcggcttgaaagaaaacgttatcgtaggtcgtttaattccggcaggt
accggttttgcgtatcaccaaaatcgcattaaaaaccgccaaaaagcattggaatcatca
gtgaaagcgatcgaaactccggcttcatctttcgttaccgatgcggatatcgaagcggaa
tttgaatttgtcgctgacgatgcaacccaaagccttgccgcattattaaattccgaaatg
gaagattaa
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integrated database retrieval system
