Rodentibacter haemolyticus: IHV77_07995
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Entry
IHV77_07995 CDS
T07810
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
rhae
Rodentibacter haemolyticus
Pathway
rhae02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
rhae00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
IHV77_07995 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rhae03021
]
IHV77_07995 (rpoD)
Transcription machinery [BR:
rhae03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
IHV77_07995 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_1
Sigma70_r1_2
DNA_ligase_A_N
Motif
Other DBs
NCBI-ProteinID:
QPB41868
LinkDB
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Position
1681410..1683296
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AA seq
628 aa
AA seq
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MEQNQQSTAEQYSEQIEQLMELGRTQGYLTYAEINDLLPEDVIDPEYYDKLLQTLQNDAG
IPVLDEAPESDDMMLNETIPDEDAVEEATQILSNVESEIGRTTDPVRMYMREMGTVDLLT
REDEISIAKRIEEGIDEVQTSIAAYPEALSDLIAQYEQVEEGNVRLADLITGFVDPNVVS
EEEAELSDDFDEDDEELDSAADVDDNENEEEDSESGSDDSGDSDNSIDPEVAREKFTQLK
DQHIKTLEAIEKHGRDHKKAQAQIVLLGEVFKQFRLVPKQFDVLVLSMKNMMKRVRGEER
QLQKVLIDIAGMPKDEFEVLINKYGSNDAWLDKALKSSKPWAKRLPKYEERIRQAIANLV
VFEQHSKLTVQQMRAICDAVARGEQKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLI
QEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNR
ISRQMLQEMGREATPEELAERMGMPEDKIRKVLKIAKEPISMETPVGDDDDSHLGDFIED
STLELPLDSATAQSLKAATHEVLEGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRE
RIRQIEAKALRKLRHPSRSETLRSFLDD
NT seq
1887 nt
NT seq
+upstream
nt +downstream
nt
atggaacaaaatcaacaatctaccgctgaacaatattcagagcaaattgaacaactgatg
gaattgggacgtacgcagggttatttaacttatgctgaaatcaatgacttacttccggaa
gatgtcatcgatccggaatactacgataagctcctgcaaacgttgcaaaatgatgcgggt
attccggtgttagatgaagctccggaaagcgatgatatgatgttaaacgagacgattccg
gatgaagatgcagtagaagaagcgactcaaattctttctaatgttgaatctgaaatcggt
cgtacaacggatccggtgcggatgtatatgcgtgaaatgggtaccgttgatttgcttact
cgtgaagatgaaatcagtatcgctaaacgtattgaagaagggattgatgaagttcaaacc
tccattgccgcttatccggaagccttaagcgatttaatcgcgcaatatgaacaagttgag
gaaggtaacgttcgtttagccgatctgatcacaggttttgttgatccgaatgtcgtttca
gaggaagaggcggaattatccgatgattttgatgaagatgacgaagagcttgattctgcg
gcggatgtagatgataacgaaaatgaagaagaggatagtgaatcgggttctgacgacagt
ggagattctgataatagtatcgatcctgaagtcgcccgtgagaaattcactcagttgaaa
gatcaacatatcaagacccttgaagcgattgaaaaacatggtcgtgatcataaaaaagcg
caagcgcagatcgtcttattaggtgaggtttttaaacagttccgccttgttccaaagcaa
tttgatgtgcttgtgttatcaatgaaaaatatgatgaagcgtgttcgtggtgaagagcgt
cagctacaaaaagtattgattgatattgccggtatgccgaaggacgaatttgaagttctg
attaataaatacggtagtaacgatgcttggttagacaaagcgcttaaatccagcaaacct
tgggctaagcgtttaccgaaatatgaggagcggattcgtcaggccattgcgaatttagtt
gtctttgaacaacattcaaagttaaccgttcaacaaatgcgggctatttgtgatgcggtg
gcacgaggcgaacaaaaagcccgccgtgcgaaaaaagaaatggtggaagcgaatttacgt
ttggtgatttctattgccaaaaaatacacaaaccgaggtttacaattcttagatttaatc
caagaaggtaatatcggcttaatgaaagcggtggataaatttgaatatcgccgcggctat
aaattctctacttatgcaacttggtggattcgtcaggcaattacacgttccattgccgat
caagcccgcactattcgtattccggttcatatgattgaaacgattaacaaattaaatcga
atttctcgtcaaatgttgcaagaaatggggcgtgaagccactccggaagaactggcggaa
cgtatgggaatgccggaggataaaatccgtaaggtgctaaaaattgcgaaagaacctatt
tcaatggaaacccctgtcggcgatgacgatgattcgcatttaggggattttattgaagat
agcacacttgaattgccgttagactcagccacggcacaaagtctgaaagcggcaactcac
gaagtgttggaaggattaaccccacgtgaggcaaaagtgttacgtatgcgtttcggtatt
gatatgaatacggatcacacccttgaggaagtgggaaaacaatttgatgtaacgcgtgaa
cgtattcgtcagattgaagcaaaagccttacgcaaacttcgtcatccaagtcgctcggaa
acattgcgcagtttcttggatgattaa
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