Rodentibacter haemolyticus: IHV77_08525
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Entry
IHV77_08525 CDS
T07810
Symbol
rhlB
Name
(GenBank) ATP-dependent RNA helicase RhlB
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
rhae
Rodentibacter haemolyticus
Pathway
rhae03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rhae00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
IHV77_08525 (rhlB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rhae03019
]
IHV77_08525 (rhlB)
Enzymes [BR:
rhae01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
IHV77_08525 (rhlB)
Messenger RNA biogenesis [BR:
rhae03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
IHV77_08525 (rhlB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
CMS1
AAA_11
Motif
Other DBs
NCBI-ProteinID:
QPB41961
LinkDB
All DBs
Position
complement(1790498..1791748)
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AA seq
416 aa
AA seq
DB search
MQQNYLSQQRFADFPLHPKVLRALQSKGFEYCTPIQALSLPITLQGKDIAGQAQTGTGKT
MAFLTATFHHLLSHQAENHNSKQPRALILAPTRELAVQISNDAELMVKTSGLKTALAYGG
DGYDKQLQAIERGVDILIGTTGRVIDYVKQGVIRLDQIQVVVLDEADRMFDLGFIRDIRY
LLRKCPAPQERLTMLFSATLSYKVRELAFEDMNNPEYIEIEPEQKTGHRIKEELFYPSNQ
DKMALLLTLMEEEWPERCIVFANTKHRCEEIWGYLAADGHRVGLLTGDIAQKKRLALLKQ
FTDGNLDILVATDVAARGLHISDVTHVFNYDLPDDREDYVHRIGRTGRAGESGVSISFAC
EEYAMNLPAIEEYIAHSIPVSQYDPASLLSLPKPLRLKSRSNNFRPTMKNRSSHQR
NT seq
1251 nt
NT seq
+upstream
nt +downstream
nt
atgcaacaaaattatttaagtcagcaacgtttcgctgattttcctctccaccctaaggtt
ctgagagccttacaaagcaagggttttgaatattgtacgcctattcaggcactttcttta
ccgatcaccttacaaggtaaggatattgccggtcaagcacaaaccggcacgggcaaaact
atggcgttcttaacggcaacttttcatcatttactcagccatcaagccgaaaatcataat
tccaaacaaccacgtgctttaattctcgctccaacccgtgaacttgcggtgcaaatcagc
aatgatgcggaactaatggtaaaaacaagcgggttaaaaaccgcacttgcttacggtggg
gacggttatgataaacaattacaagcgattgagcgtggcgtagatattttaatcggcacg
accgggcgggtgattgactatgtaaaacaaggggtgattcgtttagatcaaattcaagtt
gtggtgttagacgaggcggatcgtatgttcgatcttgggtttatacgtgatattcgttat
ttactacgtaaatgccctgctccacaagaacgcttaactatgcttttttccgcaactttg
tcctacaaagtgcgtgaactcgcctttgaagatatgaataatcctgaatatatcgaaatc
gaaccggagcaaaaaaccggacatcgaattaaagaagaattattttatccttctaatcaa
gacaaaatggctctcttactcactctaatggaagaagaatggcctgaacgctgtattgtg
tttgctaatacaaagcaccgttgtgaagaaatttgggggtatttggcggcagacgggcat
cgtgtcggtttactcacgggcgatatcgcacaaaaaaaacgtctcgccttgttaaaacaa
tttactgacggcaatttagatattttagtggcaacggatgtagccgcccgcggtttgcat
atttcagatgttacccacgtgtttaactatgatttgccggatgatcgtgaagattacgtt
caccgcatcgggcgtacgggacgagccggtgagagtggtgtttcaatcagttttgcttgc
gaagaatatgcgatgaatttgcctgctattgaggaatatattgctcattccattcctgtt
agccaatatgatccggcatctttactgagtttgccaaaaccgttgcgcttaaaatcacgt
agcaataatttccgaccaacgatgaaaaatcgttcctctcaccaaagataa
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